ON THE INSIDE:

Peter V. Minorsky

On The Inside
Plant Physiol. 2005 138: 571-572. [Full Text] [PDF]  

EDITORIALS:

Natasha Raikhel

Looking to the Future of Plant Biology Research
Plant Physiol. 2005 138: 539. [Full Text] [PDF]  

Natasha V. Raikhel, Donald Ort, and Richard Jorgensen

ASPB's Response to the NIH's Public Access Policy
Plant Physiol. 2005 138: 540-541. [Full Text] [PDF]  

VISION STATEMENT FOR PLANT PHYSIOLOGY:

Steven P. Briggs and Tatjana Singer

Genetic Networks
Plant Physiol. 2005 138: 542-544. [Full Text] [PDF]  

Ana L. Caicedo and Michael D. Purugganan

Comparative Plant Genomics. Frontiers and Prospects
Plant Physiol. 2005 138: 545-547. [Full Text] [PDF]  

Philip N. Benfey

Developmental Networks
Plant Physiol. 2005 138: 548-549. [Full Text] [PDF]  

Rodrigo A. Gutiérrez, Dennis E. Shasha, and Gloria M. Coruzzi

Systems Biology for the Virtual Plant
Plant Physiol. 2005 138: 550-554. [Full Text] [PDF]  

Loren L. Looger, Sylvie Lalonde, and Wolf B. Frommer

Genetically Encoded FRET Sensors for Visualizing Metabolites with Subcellular Resolution in Living Cells
Plant Physiol. 2005 138: 555-557. [Full Text] [PDF]  

Sean Cutler and Peter McCourt

Dude, Where's My Phenotype? Dealing with Redundancy in Signaling Networks
Plant Physiol. 2005 138: 558-559. [Full Text] [PDF]  

Paul Bertone and Michael Snyder

Prospects and Challenges in Proteomics
Plant Physiol. 2005 138: 560-562. [Full Text] [PDF]  

Natasha Raikhel and Michael Pirrung

Adding Precision Tools to the Plant Biologists' Toolbox with Chemical Genomics
Plant Physiol. 2005 138: 563-564. [Full Text] [PDF]  

James C. Carrington

Small RNAs and Arabidopsis. A Fast Forward Look
Plant Physiol. 2005 138: 565-566. [Full Text] [PDF]  

Detlef Weigel and Magnus Nordborg

Natural Variation in Arabidopsis. How Do We Find the Causal Genes?
Plant Physiol. 2005 138: 567-568. [Full Text] [PDF]  

Seung Yon Rhee

Bioinformatics. Current Limitations and Insights for the Future
Plant Physiol. 2005 138: 569-570. [Full Text] [PDF]  

UPDATE ON CHEMMINE:

Thomas Girke, Li-Chang Cheng, and Natasha Raikhel

ChemMine. A Compound Mining Database for Chemical Genomics
Plant Physiol. 2005 138: 573-577. [Full Text] [PDF]  

UPDATE ON EVOLUTIONARY AND ECOLOGICAL GENOMICS OF ARABIDOPSIS:

Kentaro K. Shimizu and Michael D. Purugganan

Evolutionary and Ecological Genomics of Arabidopsis
Plant Physiol. 2005 138: 578-584. [Full Text] [PDF]  

UPDATE ON HIGH-THROUGHPUT RNA ISOLATION TECHNOLOGIES:

Ji-Young Lee, Mitchell Levesque, and Philip N. Benfey

High-Throughput RNA Isolation Technologies. New Tools for High-Resolution Gene Expression Profiling in Plant Systems
Plant Physiol. 2005 138: 585-590. [Full Text] [PDF]  

UPDATE ON ARABIDOPSIS PROTEOMICS:

Scott C. Peck

Update on Proteomics in Arabidopsis. Where Do We Go From Here?
Plant Physiol. 2005 138: 591-599. [Full Text] [PDF]  

BREAKTHROUGH TECHNOLOGIES:

María Eugenia Zanetti, Ing-Feng Chang, Fangcheng Gong, David W. Galbraith, and Julia Bailey-Serres

Immunopurification of Polyribosomal Complexes of Arabidopsis for Global Analysis of Gene Expression
Plant Physiol. 2005 138: 624-635. [Abstract] [Full Text] [PDF] [Supplemental Data]  

SCIENTIFIC CORRESPONDENCE:

Alice J. Paquette and Philip N. Benfey

Maturation of the Ground Tissue of the Root Is Regulated by Gibberellin and SCARECROW and Requires SHORT-ROOT
Plant Physiol. 2005 138: 636-640. [Full Text] [PDF] [Supplemental Data]  

GENOME ANALYSIS:

Kevin A.T. Silverstein, Michelle A. Graham, Timothy D. Paape, and Kathryn A. VandenBosch

Genome Organization of More Than 300 Defensin-Like Genes in Arabidopsis
Plant Physiol. 2005 138: 600-610. [Abstract] [Full Text] [PDF] [Supplemental Data I_][Supplemental Data II]  

Lillian K. Fritz-Laylin, Nandini Krishnamurthy, Mahmut Tör, Kimmen V. Sjölander, and Jonathan D.G. Jones

Phylogenomic Analysis of the Receptor-Like Proteins of Rice and Arabidopsis
Plant Physiol. 2005 138: 611-623. [Abstract] [Full Text] [PDF] [Supplemental Data]  

BIOCHEMICAL PROCESSES AND MACROMOLECULAR STRUCTURES:

Ming-Hsiun Hsieh and Howard M. Goodman

The Arabidopsis IspH Homolog Is Involved in the Plastid Nonmevalonate Pathway of Isoprenoid Biosynthesis
Plant Physiol. 2005 138: 641-653. First Published on April 29, 2005; 10.1104/pp.104.058735 [Abstract] [Full Text] [PDF]  

Tonglin Mao, Lifeng Jin, Hua Li, Bo Liu, and Ming Yuan

Two Microtubule-Associated Proteins of the Arabidopsis MAP65 Family Function Differently on Microtubules
Plant Physiol. 2005 138: 654-662. First Published on May 20, 2005; 10.1104/pp.104.052456 [Abstract] [Full Text] [PDF]  

Xiaoli Zhang, Alan M. Myers, and Martha G. James

Mutations Affecting Starch Synthase III in Arabidopsis Alter Leaf Starch Structure and Increase the Rate of Starch Synthesis
Plant Physiol. 2005 138: 663-674. First Published on May 20, 2005; 10.1104/pp.105.060319 [Abstract] [Full Text] [PDF]  

Adam J. Book, Peizhen Yang, Mark Scalf, Lloyd M. Smith, and Richard D. Vierstra

Tripeptidyl Peptidase II. An Oligomeric Protease Complex from Arabidopsis
Plant Physiol. 2005 138: 1046-1057. First Published on May 20, 2005; 10.1104/pp.104.057406 [Abstract] [Full Text] [PDF]  

Pawel Bednarek, Bernd Schneider, Ales Svatos, Neil J. Oldham, and Klaus Hahlbrock

Structural Complexity, Differential Response to Infection, and Tissue Specificity of Indolic and Phenylpropanoid Secondary Metabolism in Arabidopsis Roots
Plant Physiol. 2005 138: 1058-1070. First Published on May 27, 2005; 10.1104/pp.104.057794 [Abstract] [Full Text] [PDF] [Supplemental Data]  

Kexi Yi, Chunqing Guo, Ding Chen, Binbin Zhao, Bin Yang, and Haiyun Ren

Cloning and Functional Characterization of a Formin-Like Protein (AtFH8) from Arabidopsis
Plant Physiol. 2005 138: 1071-1082. First Published on May 27, 2005; 10.1104/pp.104.055665 [Abstract] [Full Text] [PDF]  

CELL BIOLOGY AND SIGNAL TRANSDUCTION:

Hironaka Tsukagoshi, Takanori Saijo, Daisuke Shibata, Atsushi Morikami, and Kenzo Nakamura

Analysis of a Sugar Response Mutant of Arabidopsis Identified a Novel B3 Domain Protein That Functions as an Active Transcriptional Repressor
Plant Physiol. 2005 138: 675-685. First Published on May 13, 2005; 10.1104/pp.104.057752 [Abstract] [Full Text] [PDF]  

Mary Elizabeth Williams, Javad Torabinejad, Evan Cohick, Katherine Parker, Elizabeth J. Drake, James E. Thompson, Michelle Hortter, and Daryll B. DeWald

Mutations in the Arabidopsis Phosphoinositide Phosphatase Gene SAC9 Lead to Overaccumulation of PtdIns(4,5)P₂ and Constitutive Expression of the Stress-Response Pathway
Plant Physiol. 2005 138: 686-700. First Published on May 27, 2005; 10.1104/pp.105.061317 [Abstract] [Full Text] [PDF]  

Christen Y.L. Yuen, John C. Sedbrook, Robyn M. Perrin, Kathleen L. Carroll, and Patrick H. Masson

Loss-of-Function Mutations of ROOT HAIR DEFECTIVE3 Suppress Root Waving, Skewing, and Epidermal Cell File Rotation in Arabidopsis
Plant Physiol. 2005 138: 701-714. First Published on May 20, 2005; 10.1104/pp.105.059774 [Abstract] [Full Text] [PDF]  

Amy Baldwin, Anthony Wardle, Ramesh Patel, Penny Dudley, Soon Ki Park, David Twell, Kentaro Inoue, and Paul Jarvis

A Molecular-Genetic Study of the Arabidopsis Toc75 Gene Family
Plant Physiol. 2005 138: 715-733. First Published on May 20, 2005; 10.1104/pp.105.063289 [Abstract] [Full Text] [PDF]  

Frank Mehrtens, Harald Kranz, Pawel Bednarek, and Bernd Weisshaar

The Arabidopsis Transcription Factor MYB12 Is a Flavonol-Specific Regulator of Phenylpropanoid Biosynthesis
Plant Physiol. 2005 138: 1083-1096. First Published on May 27, 2005; 10.1104/pp.104.058032 [Abstract] [Full Text] [PDF]  

Sarah J. Cookson, Lorraine E. Williams, and Anthony J. Miller

Light-Dark Changes in Cytosolic Nitrate Pools Depend on Nitrate Reductase Activity in Arabidopsis Leaf Cells
Plant Physiol. 2005 138: 1097-1105. First Published on May 20, 2005; 10.1104/pp.105.062349 [Abstract] [Full Text] [PDF] [Supplemental Data]  

DEVELOPMENT AND HORMONE ACTION:

Gerrit T.S. Beemster, Lieven De Veylder, Steven Vercruysse, Gerrit West, Debbie Rombaut, Paul Van Hummelen, Arnaud Galichet, Wilhelm Gruissem, Dirk Inzé, and Marnik Vuylsteke

Genome-Wide Analysis of Gene Expression Profiles Associated with Cell Cycle Transitions in Growing Organs of Arabidopsis
Plant Physiol. 2005 138: 734-743. First Published on April 29, 2005; 10.1104/pp.104.053884 [Abstract] [Full Text] [PDF] [Suppelemental Data]  

Cristina Pina, Francisco Pinto, José A. Feijó, and Jörg D. Becker

Gene Family Analysis of the Arabidopsis Pollen Transcriptome Reveals Biological Implications for Cell Growth, Division Control, and Gene Expression Regulation
Plant Physiol. 2005 138: 744-756. First Published on May 20, 2005; 10.1104/pp.104.057935 [Abstract] [Full Text] [PDF] [Supplemental Data]  

Kiyoshi Tatematsu, Sally Ward, Ottoline Leyser, Yuji Kamiya, and Eiji Nambara

Identification of cis-Elements That Regulate Gene Expression during Initiation of Axillary Bud Outgrowth in Arabidopsis
Plant Physiol. 2005 138: 757-766. First Published on May 20, 2005; 10.1104/pp.104.057984 [Abstract] [Full Text] [PDF] [Supplemental Data]  

Nicole K. Clay and Timothy Nelson

Arabidopsis thickvein Mutation Affects Vein Thickness and Organ Vascularization, and Resides in a Provascular Cell-Specific Spermine Synthase Involved in Vein Definition and in Polar Auxin Transport
Plant Physiol. 2005 138: 767-777. First Published on May 13, 2005; 10.1104/pp.104.055756 [Abstract] [Full Text] [PDF]  

Juan Dong, Sun Tae Kim, and Elizabeth M. Lord

Plantacyanin Plays a Role in Reproduction in Arabidopsis
Plant Physiol. 2005 138: 778-789. First Published on May 20, 2005; 10.1104/pp.105.063388 [Abstract] [Full Text] [PDF]  

Claudette Job, Loïc Rajjou, Yoann Lovigny, Maya Belghazi, and Dominique Job

Patterns of Protein Oxidation in Arabidopsis Seeds and during Germination
Plant Physiol. 2005 138: 790-802. First Published on May 20, 2005; 10.1104/pp.105.062778 [Abstract] [Full Text] [PDF] [Supplemental Data]  

Chengsong Zhao, Johanna C. Craig, H. Earl Petzold, Allan W. Dickerman, and Eric P. Beers

The Xylem and Phloem Transcriptomes from Secondary Tissues of the Arabidopsis Root-Hypocotyl
Plant Physiol. 2005 138: 803-818. First Published on May 27, 2005; 10.1104/pp.105.060202 [Abstract] [Full Text] [PDF] [Supplemental Data]  

Shinichiro Sawa, Koji Koizumi, Satoshi Naramoto, Taku Demura, Takashi Ueda, Akihiko Nakano, and Hiroo Fukuda

DRP1A Is Responsible for Vascular Continuity Synergistically Working with VAN3 in Arabidopsis
Plant Physiol. 2005 138: 819-826. First Published on May 27, 2005; 10.1104/pp.105.061689 [Abstract] [Full Text] [PDF]  

Tamotsu Hisamatsu, Rod W. King, Chris A. Helliwell, and Masaji Koshioka

The Involvement of Gibberellin 20-Oxidase Genes in Phytochrome-Regulated Petiole Elongation of Arabidopsis
Plant Physiol. 2005 138: 1106-1116. First Published on May 27, 2005; 10.1104/pp.104.059055 [Abstract] [Full Text] [PDF]  

Kiwamu Tanaka, Tadao Asami, Shigeo Yoshida, Yasushi Nakamura, Tomoaki Matsuo, and Shigehisa Okamoto

Brassinosteroid Homeostasis in Arabidopsis Is Ensured by Feedback Expressions of Multiple Genes Involved in Its Metabolism
Plant Physiol. 2005 138: 1117-1125. First Published on May 20, 2005; 10.1104/pp.104.058040 [Abstract] [Full Text] [PDF]  

ENVIRONMENTAL STRESS AND ADAPTATION:

Miyoung Lee, Kiyoul Lee, Joohyun Lee, Eun Woon Noh, and Youngsook Lee

AtPDR12 Contributes to Lead Resistance in Arabidopsis
Plant Physiol. 2005 138: 827-836. First Published on May 27, 2005; 10.1104/pp.104.058107 [Abstract] [Full Text] [PDF]  

Ryoichi Yano, Masanobu Nakamura, Tadakatsu Yoneyama, and Ikuo Nishida

Starch-Related -Glucan/Water Dikinase Is Involved in the Cold-Induced Development of Freezing Tolerance in Arabidopsis
Plant Physiol. 2005 138: 837-846. First Published on May 13, 2005; 10.1104/pp.104.056374 [Abstract] [Full Text] [PDF]  

José Manuel Franco-Zorrilla, Ana Carmen Martín, Antonio Leyva, and Javier Paz-Ares

Interaction between Phosphate-Starvation, Sugar, and Cytokinin Signaling in Arabidopsis and the Roles of Cytokinin Receptors CRE1/AHK4 and AHK3
Plant Physiol. 2005 138: 847-857. First Published on May 27, 2005; 10.1104/pp.105.060517 [Abstract] [Full Text] [PDF]  

Melissa P. Mezzari, Katherine Walters, Marcela Jelínkova, Ming-Che Shih, Craig L. Just, and Jerald L. Schnoor

Gene Expression and Microscopic Analysis of Arabidopsis Exposed to Chloroacetanilide Herbicides and Explosive Compounds. A Phytoremediation Approach
Plant Physiol. 2005 138: 858-869. First Published on May 27, 2005; 10.1104/pp.104.056168 [Abstract] [Full Text] [PDF]  

Shinya Takahashi, Ayako Sakamoto, Shusei Sato, Tomohiko Kato, Satoshi Tabata, and Atsushi Tanaka

Roles of Arabidopsis AtREV1 and AtREV7 in Translesion Synthesis
Plant Physiol. 2005 138: 870-881. First Published on May 20, 2005; 10.1104/pp.105.060236 [Abstract] [Full Text] [PDF]  

Jane Larkindale, Jennifer D. Hall, Marc R. Knight, and Elizabeth Vierling

Heat Stress Phenotypes of Arabidopsis Mutants Implicate Multiple Signaling Pathways in the Acquisition of Thermotolerance
Plant Physiol. 2005 138: 882-897. First Published on May 27, 2005; 10.1104/pp.105.062257 [Abstract] [Full Text] [PDF] [Supplemental Data]  

Céline Diaz, Sarah Purdy, Aurélie Christ, Jean-Francois Morot-Gaudry, Astrid Wingler, and Céline Masclaux-Daubresse

Characterization of Markers to Determine the Extent and Variability of Leaf Senescence in Arabidopsis. A Metabolic Profiling Approach
Plant Physiol. 2005 138: 898-908. First Published on May 27, 2005; 10.1104/pp.105.060764 [Abstract] [Full Text] [PDF]  

Christina Vieira Dos Santos, Stéphan Cuiné, Nicolas Rouhier, and Pascal Rey

The Arabidopsis Plastidic Methionine Sulfoxide Reductase B Proteins. Sequence and Activity Characteristics, Comparison of the Expression with Plastidic Methionine Sulfoxide Reductase A, and Induction by Photooxidative Stress
Plant Physiol. 2005 138: 909-922. First Published on May 27, 2005; 10.1104/pp.105.062430 [Abstract] [Full Text] [PDF]  

GENETICS, GENOMICS, AND MOLECULAR EVOLUTION:

Xin-Ying Ren, Mark W.E.J. Fiers, Willem J. Stiekema, and Jan-Peter Nap

Local Coexpression Domains of Two to Four Genes in the Genome of Arabidopsis
Plant Physiol. 2005 138: 923-934. First Published on May 27, 2005; 10.1104/pp.104.055673 [Abstract] [Full Text] [PDF] [Supplemental Data]  

Yujun Zhang, Yongrui Wu, Yilei Liu, and Bin Han

Computational Identification of 69 Retroposons in Arabidopsis
Plant Physiol. 2005 138: 935-948. First Published on May 27, 2005; 10.1104/pp.105.060244 [Abstract] [Full Text] [PDF] [Supplemental Data]  

Rongcheng Lin and Haiyang Wang

Two Homologous ATP-Binding Cassette Transporter Proteins, AtMDR1 and AtPGP1, Regulate Arabidopsis Photomorphogenesis and Root Development by Mediating Polar Auxin Transport
Plant Physiol. 2005 138: 949-964. First Published on May 20, 2005; 10.1104/pp.105.061572 [Abstract] [Full Text] [PDF]  

Wuxing Li, Xiaohui Yang, Zhenguo Lin, Ljudmilla Timofejeva, Rong Xiao, Christopher A. Makaroff, and Hong Ma

The AtRAD51C Gene Is Required for Normal Meiotic Chromosome Synapsis and Double-Stranded Break Repair in Arabidopsis
Plant Physiol. 2005 138: 965-976. First Published on May 27, 2005; 10.1104/pp.104.058347 [Abstract] [Full Text] [PDF]  

Chih-Wei Tung, Kathleen G. Dwyer, Mikhail E. Nasrallah, and June B. Nasrallah

Genome-Wide Identification of Genes Expressed in Arabidopsis Pistils Specifically along the Path of Pollen Tube Growth
Plant Physiol. 2005 138: 977-989. First Published on May 13, 2005; 10.1104/pp.105.060558 [Abstract] [Full Text] [PDF] [Supplemental Data]  

Samuel P. Hazen, Justin O. Borevitz, Frank G. Harmon, Jose L. Pruneda-Paz, Thomas F. Schultz, Marcelo J. Yanovsky, Sarah J. Liljegren, Joseph R. Ecker, and Steve A. Kay

Rapid Array Mapping of Circadian Clock and Developmental Mutations in Arabidopsis
Plant Physiol. 2005 138: 990-997. First Published on May 20, 2005; 10.1104/pp.105.061408 [Abstract] [Full Text] [PDF]  

Teresa M. Alconada Magliano, Javier F. Botto, A. Veronica Godoy, V. Vaughan Symonds, Alan M. Lloyd, and Jorge J. Casal

New Arabidopsis Recombinant Inbred Lines (Landsberg erecta x Nossen) Reveal Natural Variation in Phytochrome-Mediated Responses
Plant Physiol. 2005 138: 1126-1135. First Published on May 20, 2005; 10.1104/pp.104.059071 [Abstract] [Full Text] [PDF]  

Christopher M. Fraser, Lance W. Rider, and Clint Chapple

An Expression and Bioinformatics Analysis of the Arabidopsis Serine Carboxypeptidase-Like Gene Family
Plant Physiol. 2005 138: 1136-1148. First Published on May 20, 2005; 10.1104/pp.104.057950 [Abstract] [Full Text] [PDF] [Supplemental Data]  

PLANTS INTERACTING WITH OTHER ORGANISMS:

Maïté Vicré, Catherine Santaella, Sandrine Blanchet, Aurélien Gateau, and Azeddine Driouich

Root Border-Like Cells of Arabidopsis. Microscopical Characterization and Role in the Interaction with Rhizobacteria
Plant Physiol. 2005 138: 998-1008. First Published on May 20, 2005; 10.1104/pp.104.051813 [Abstract] [Full Text] [PDF] [Supplemental Data]  

Sharon M. Pike, Xue-Cheng Zhang, and Walter Gassmann

Electrophysiological Characterization of the Arabidopsis avrRpt2-Specific Hypersensitive Response in the Absence of Other Bacterial Signals
Plant Physiol. 2005 138: 1009-1017. First Published on May 20, 2005; 10.1104/pp.104.047142 [Abstract] [Full Text] [PDF]  

Dingzhong Tang, Katy M. Christiansen, and Roger W. Innes

Regulation of Plant Disease Resistance, Stress Responses, Cell Death, and Ethylene Signaling in Arabidopsis by the EDR1 Protein Kinase
Plant Physiol. 2005 138: 1018-1026. First Published on May 13, 2005; 10.1104/pp.105.060400 [Abstract] [Full Text] [PDF]  

Katrina Ramonell, Marta Berrocal-Lobo, Serry Koh, Jinrong Wan, Herb Edwards, Gary Stacey, and Shauna Somerville

Loss-of-Function Mutations in Chitin Responsive Genes Show Increased Susceptibility to the Powdery Mildew Pathogen Erysiphe cichoracearum
Plant Physiol. 2005 138: 1027-1036. First Published on May 27, 2005; 10.1104/pp.105.060947 [Abstract] [Full Text] [PDF] [Supplemental Data]  

Peter Brodersen, Frederikke Gro Malinovsky, Kian Hématy, Mari-Anne Newman, and John Mundy

The Role of Salicylic Acid in the Induction of Cell Death in Arabidopsis acd11
Plant Physiol. 2005 138: 1037-1045. First Published on May 27, 2005; 10.1104/pp.105.059303 [Abstract] [Full Text] [PDF]  

Inga Mewis, Heidi M. Appel, Amanda Hom, Ramesh Raina, and Jack C. Schultz

Major Signaling Pathways Modulate Arabidopsis Glucosinolate Accumulation and Response to Both Phloem-Feeding and Chewing Insects
Plant Physiol. 2005 138: 1149-1162. First Published on May 27, 2005; 10.1104/pp.104.053389 [Abstract] [Full Text] [PDF]  

WHOLE PLANT AND ECOPHYSIOLOGY:

Chikako Shindo, Maria Jose Aranzana, Clare Lister, Catherine Baxter, Colin Nicholls, Magnus Nordborg, and Caroline Dean

Role of FRIGIDA and FLOWERING LOCUS C in Determining Variation in Flowering Time of Arabidopsis
Plant Physiol. 2005 138: 1163-1173. First Published on May 20, 2005; 10.1104/pp.105.061309 [Abstract] [Full Text] [PDF] [Supplemental Data]  

CORRECTIONS:

CORRECTION
Plant Physiol. 2005 138: 1174. [Full Text] [PDF]  

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