ON THE INSIDE:

Peter V. Minorsky

Plant Physiol. 2004 135: 599-600. [Full Text] [PDF]  

EDITORIALS:

Bonnie Bartel and Robert L. Last

Weed Power, Translating Arabidopsis
Plant Physiol. 2004 135: 601. [Full Text] [PDF]  

PERSPECTIVES ON TRANSLATIONAL BIOLOGY:

Michael Bevan and Sean Walsh

Positioning Arabidopsis in Plant Biology. A Key Step Toward Unification of Plant Research
Plant Physiol. 2004 135: 602-606. [Abstract] [Full Text] [PDF]  

Benjamin L. Gutman and Krishna K. Niyogi

Chlamydomonas and Arabidopsis. A Dynamic Duo
Plant Physiol. 2004 135: 607-610. [Abstract] [Full Text] [PDF]  

Vivian F. Irish and Philip N. Benfey

Beyond Arabidopsis. Translational Biology Meets Evolutionary Developmental Biology
Plant Physiol. 2004 135: 611-614. [Abstract] [Full Text] [PDF]  

James Z. Zhang, Robert A. Creelman, and Jian-Kang Zhu

From Laboratory to Field. Using Information from Arabidopsis to Engineer Salt, Cold, and Drought Tolerance in Crops
Plant Physiol. 2004 135: 615-621. First Published on June 1, 2004; 10.1104/pp.104.040295 [Full Text] [PDF]  

W.A. Rensink and C. Robin Buell

Arabidopsis to Rice. Applying Knowledge from a Weed to Enhance Our Understanding of a Crop Species
Plant Physiol. 2004 135: 622-629. [Abstract] [Full Text] [PDF]  

Steven Henikoff, Bradley J. Till, and Luca Comai

TILLING. Traditional Mutagenesis Meets Functional Genomics
Plant Physiol. 2004 135: 630-636. First Published on May 21, 2004; 10.1104/pp.104.041061 [Abstract] [Full Text] [PDF]  

Blake C. Meyers, David W. Galbraith, Timothy Nelson, and Vikas Agrawal

Methods for Transcriptional Profiling in Plants. Be Fruitful and Replicate
Plant Physiol. 2004 135: 637-652. First Published on June 1, 2004; 10.1104/pp.104.040840 [Full Text] [PDF]  

UPDATE ON XYLEM DEVELOPMENT:

Kaisa M. Nieminen, Leila Kauppinen, and Ykä Helariutta

A Weed for Wood? Arabidopsis as a Genetic Model for Xylem Development
Plant Physiol. 2004 135: 653-659. [Full Text] [PDF]  

UPDATE ON ETHYLENE SIGNALING:

Harry J. Klee

Ethylene Signal Transduction. Moving beyond Arabidopsis
Plant Physiol. 2004 135: 660-667. [Full Text] [PDF]  

UPDATE ON GIBBERELLIN SIGNALING:

Stephen G. Thomas and Tai-ping Sun

Update on Gibberellin Signaling. A Tale of the Tall and the Short
Plant Physiol. 2004 135: 668-676. [Full Text] [PDF]  

UPDATE ON PHOTOPERIOD RESPONSE:

Ryosuke Hayama and George Coupland

The Molecular Basis of Diversity in the Photoperiodic Flowering Responses of Arabidopsis and Rice
Plant Physiol. 2004 135: 677-684. [Full Text] [PDF]  

UPDATE ON LATERAL ORGAN POLARITY:

Eric M. Engstrom, Anat Izhaki, and John L. Bowman

Promoter Bashing, microRNAs, and Knox Genes. New Insights, Regulators, and Targets-of-Regulation in the Establishment of Lateral Organ Polarity in Arabidopsis
Plant Physiol. 2004 135: 685-694. [Full Text] [PDF]  

UPDATE ON PATHOGEN RECOGNITION:

Roger W. Innes

Guarding the Goods. New Insights into the Central Alarm System of Plants
Plant Physiol. 2004 135: 695-701. [Full Text] [PDF]  

UPDATE ON REACTIVE OXYGEN SPECIES ACTIVATION OF Ca2+ CHANNELS:

Izumi C. Mori and Julian I. Schroeder

Reactive Oxygen Species Activation of Plant Ca²⁺ Channels. A Signaling Mechanism in Polar Growth, Hormone Transduction, Stress Signaling, and Hypothetically Mechanotransduction
Plant Physiol. 2004 135: 702-708. [Full Text] [PDF]  

BREAKTHROUGH TECHNOLOGIES:

Shu Wei, Ben-Ami Bravdo, and Oded Shoseyov

Fluorescent Screening of Transgenic Arabidopsis Seeds without Germination
Plant Physiol. 2004 135: 709-714. [Abstract] [Full Text] [PDF]  

BIOINFORMATICS:

Sigrun Reumann

Specification of the Peroxisome Targeting Signals Type 1 and Type 2 of Plant Peroxisomes by Bioinformatics Analyses
Plant Physiol. 2004 135: 783-800. [Abstract] [Full Text] [PDF] [Supplemental Data]  

Blake C. Meyers, David K. Lee, Tam H. Vu, Shivakundan Singh Tej, Steve B. Edberg, Marta Matvienko, and Larry D. Tindell

Arabidopsis MPSS. An Online Resource for Quantitative Expression Analysis
Plant Physiol. 2004 135: 801-813. First Published on June 1, 2004; 10.1104/pp.104.039495 [Full Text] [PDF] [Supplemental Data]  

GENOME ANALYSIS:

Stephen Rudd, Matthias Frisch, Korbinian Grote, Blake C. Meyers, Klaus Mayer, and Thomas Werner

Genome-Wide in Silico Mapping of Scaffold/Matrix Attachment Regions in Arabidopsis Suggests Correlation of Intragenic Scaffold/Matrix Attachment Regions with Gene Expression
Plant Physiol. 2004 135: 715-722. [Abstract] [Full Text] [PDF] [Supplemental Data]  

Qi Sun, Olof Emanuelsson, and Klaas J. van Wijk

Analysis of Curated and Predicted Plastid Subproteomes of Arabidopsis. Subcellular Compartmentalization Leads to Distinctive Proteome Properties
Plant Physiol. 2004 135: 723-734. [Abstract] [Full Text] [PDF] [Supplemental Data]  

Karine Boivin, Adile Acarkan, Rosa-Stella Mbulu, Oliver Clarenz, and Renate Schmidt

The Arabidopsis Genome Sequence as a Tool for Genome Analysis in Brassicaceae. A Comparison of the Arabidopsis and Capsella rubella Genomes
Plant Physiol. 2004 135: 735-744. [Abstract] [Full Text] [PDF] [Supplemental Data]  

Tanya Z. Berardini, Suparna Mundodi, Leonore Reiser, Eva Huala, Margarita Garcia-Hernandez, Peifen Zhang, Lukas A. Mueller, Jungwoon Yoon, Aisling Doyle, Gabriel Lander, Nick Moseyko, Danny Yoo, Iris Xu, Brandon Zoeckler, Mary Montoya, Neil Miller, Dan Weems, and Seung Y. Rhee

Functional Annotation of the Arabidopsis Genome Using Controlled Vocabularies
Plant Physiol. 2004 135: 745-755. First Published on June 1, 2004; 10.1104/pp.104.040071 [Abstract] [Full Text] [PDF]  

David R. Nelson, Mary A. Schuler, Suzanne M. Paquette, Daniele Werck-Reichhart, and Søren Bak

Comparative Genomics of Rice and Arabidopsis. Analysis of 727 Cytochrome P450 Genes and Pseudogenes from a Monocot and a Dicot
Plant Physiol. 2004 135: 756-772. [Abstract] [Full Text] [PDF] [Supplemental Data]  

Wei Gong, Yun-Ping Shen, Li-Geng Ma, Yi Pan, Yun-Long Du, Dong-Hui Wang, Jian-Yu Yang, Li-De Hu, Xin-Fang Liu, Chun-Xia Dong, Li Ma, Yan-Hui Chen, Xiao-Yuan Yang, Ying Gao, Danmeng Zhu, Xiaoli Tan, Jin-Ye Mu, Da-Bing Zhang, Yu-Le Liu, S.P. Dinesh-Kumar, Yi Li, Xi-Ping Wang, Hong-Ya Gu, Li-Jia Qu, Shu-Nong Bai, Ying-Tang Lu, Jia-Yang Li, Jin-Dong Zhao, Jianru Zuo, Hai Huang, Xing Wang Deng, and Yu-Xian Zhu

Genome-Wide ORFeome Cloning and Analysis of Arabidopsis Transcription Factor Genes
Plant Physiol. 2004 135: 773-782. [Abstract] [Full Text] [PDF] [Supplemental Data]  

BIOCHEMICAL PROCESSES AND MACROMOLECULAR STRUCTURES:

Yun Lin, Joanne E. Cluette-Brown, and Howard M. Goodman

The Peroxisome Deficient Arabidopsis Mutant sse1 Exhibits Impaired Fatty Acid Synthesis
Plant Physiol. 2004 135: 814-827. First Published on June 1, 2004; 10.1104/pp.103.036772 [Abstract] [Full Text] [PDF] [Supplemental Data]  

Ben Field, Guillermo Cardon, Maria Traka, Johan Botterman, Guy Vancanneyt, and Richard Mithen

Glucosinolate and Amino Acid Biosynthesis in Arabidopsis
Plant Physiol. 2004 135: 828-839. First Published on May 21, 2004; 10.1104/pp.104.039347 [Abstract] [Full Text] [PDF]  

Titima Tantikanjana, Michael Dalgaard Mikkelsen, Mumtaz Hussain, Barbara Ann Halkier, and Venkatesan Sundaresan

Functional Analysis of the Tandem-Duplicated P450 Genes SPS/BUS/CYP79F1 and CYP79F2 in Glucosinolate Biosynthesis and Plant Development by Ds Transposition-Generated Double Mutants
Plant Physiol. 2004 135: 840-848. First Published on June 11, 2004; 10.1104/pp.104.040113 [Abstract] [Full Text] [PDF]  

Samuel C. Zeeman, David Thorneycroft, Nicole Schupp, Andrew Chapple, Melanie Weck, Hannah Dunstan, Pierre Haldimann, Nicole Bechtold, Alison M. Smith, and Steven M. Smith

Plastidial -Glucan Phosphorylase Is Not Required for Starch Degradation in Arabidopsis Leaves But Has a Role in the Tolerance of Abiotic Stress
Plant Physiol. 2004 135: 849-858. First Published on June 1, 2004; 10.1104/pp.103.032631 [Abstract] [Full Text] [PDF]  

Thomas Colin Michael Fraser, Baoxiu Qi, Salah Elhussein, Sunantha Chatrattanakunchai, Allan Keith Stobart, and Colin Michael Lazarus

Expression of the Isochrysis C18-⁹ Polyunsaturated Fatty Acid Specific Elongase Component Alters Arabidopsis Glycerolipid Profiles
Plant Physiol. 2004 135: 859-866. First Published on June 1, 2004; 10.1104/pp.104.038984 [Abstract] [Full Text] [PDF]  

Zoran Minic, Christophe Rihouey, Cao Trung Do, Patrice Lerouge, and Lise Jouanin

Purification and Characterization of Enzymes Exhibiting -D-Xylosidase Activities in Stem Tissues of Arabidopsis
Plant Physiol. 2004 135: 867-878. First Published on June 4, 2004; 10.1104/pp.104.041269 [Abstract] [Full Text] [PDF]  

Henriette Schluepmann, Anja van Dijken, Mahnaz Aghdasi, Barry Wobbes, Matthew Paul, and Sjef Smeekens

Trehalose Mediated Growth Inhibition of Arabidopsis Seedlings Is Due to Trehalose-6-Phosphate Accumulation
Plant Physiol. 2004 135: 879-890. First Published on June 4, 2004; 10.1104/pp.104.039503 [Abstract] [Full Text] [PDF] [Supplemental Data]  

BIOENERGETICS AND PHOTOSYNTHESIS:

Robin G. Walters, Douglas G. Ibrahim, Peter Horton, and Nicholas J. Kruger

A Mutant of Arabidopsis Lacking the Triose-Phosphate/Phosphate Translocator Reveals Metabolic Regulation of Starch Breakdown in the Light
Plant Physiol. 2004 135: 891-906. First Published on June 1, 2004; 10.1104/pp.104.040469 [Abstract] [Full Text] [PDF] [Supplemental Data]  

CELL BIOLOGY AND SIGNAL TRANSDUCTION:

Jin-Gui Chen, Sona Pandey, Jirong Huang, José M. Alonso, Joseph R. Ecker, Sarah M. Assmann, and Alan M. Jones

GCR1 Can Act Independently of Heterotrimeric G-Protein in Response to Brassinosteroids and Gibberellins in Arabidopsis Seed Germination
Plant Physiol. 2004 135: 907-915. First Published on June 4, 2004; 10.1104/pp.104.038992 [Abstract] [Full Text] [PDF] [Supplemental Data]  

Michael Bauer, Christof Dietrich, Katharina Nowak, Walter D. Sierralta, and Jutta Papenbrock

Intracellular Localization of Arabidopsis Sulfurtransferases
Plant Physiol. 2004 135: 916-926. First Published on June 4, 2004; 10.1104/pp.104.040121 [Abstract] [Full Text] [PDF]  

Michael G. Mason, Jie Li, Dennis E. Mathews, Joseph J. Kieber, and G. Eric Schaller

Type-B Response Regulators Display Overlapping Expression Patterns in Arabidopsis
Plant Physiol. 2004 135: 927-937. First Published on June 1, 2004; 10.1104/pp.103.038109 [Abstract] [Full Text] [PDF]  

Mustafa E. Ercetin and Glenda E. Gillaspy

Molecular Characterization of an Arabidopsis Gene Encoding a Phospholipid-Specific Inositol Polyphosphate 5-Phosphatase
Plant Physiol. 2004 135: 938-946. First Published on June 4, 2004; 10.1104/pp.104.040253 [Abstract] [Full Text] [PDF] [Supplemental Data]  

Maisie Lo, Catherine Taylor, Li Wang, Linda Nowack, Tzann-Wei Wang, and John Thompson

Characterization of an Ultraviolet B-Induced Lipase in Arabidopsis
Plant Physiol. 2004 135: 947-958. First Published on June 4, 2004; 10.1104/pp.103.036376 [Abstract] [Full Text] [PDF]  

DEVELOPMENT AND HORMONE ACTION:

Guislaine Refrégier, Sandra Pelletier, Danielle Jaillard, and Herman Höfte

Interaction between Wall Deposition and Cell Elongation in Dark-Grown Hypocotyl Cells in Arabidopsis
Plant Physiol. 2004 135: 959-968. First Published on June 4, 2004; 10.1104/pp.104.038711 [Abstract] [Full Text] [PDF]  

Anja J.H. van Dijken, Henriette Schluepmann, and Sjef C.M. Smeekens

Arabidopsis Trehalose-6-Phosphate Synthase 1 Is Essential for Normal Vegetative Growth and Transition to Flowering
Plant Physiol. 2004 135: 969-977. First Published on June 4, 2004; 10.1104/pp.104.039743 [Abstract] [Full Text] [PDF]  

Rebekah A. Rampey, Sherry LeClere, Mariusz Kowalczyk, Karin Ljung, Göran Sandberg, and Bonnie Bartel

A Family of Auxin-Conjugate Hydrolases That Contributes to Free Indole-3-Acetic Acid Levels during Arabidopsis Germination
Plant Physiol. 2004 135: 978-988. First Published on May 21, 2004; 10.1104/pp.104.039677 [Abstract] [Full Text] [PDF]  

Sherry LeClere, Rebekah A. Rampey, and Bonnie Bartel

IAR4, a Gene Required for Auxin Conjugate Sensitivity in Arabidopsis, Encodes a Pyruvate Dehydrogenase E1 Homolog
Plant Physiol. 2004 135: 989-999. First Published on June 1, 2004; 10.1104/pp.104.040519 [Abstract] [Full Text] [PDF]  

Rong Zhou, Min Yu, and Richard P. Pharis

16,17-Dihydro Gibberellin A₅ Competitively Inhibits a Recombinant Arabidopsis GA 3-Hydroxylase Encoded by the GA4 Gene
Plant Physiol. 2004 135: 1000-1007. First Published on June 4, 2004; 10.1104/pp.104.041509 [Abstract] [Full Text] [PDF]  

Ludmila Tyler, Stephen G. Thomas, Jianhong Hu, Alyssa Dill, Jose M. Alonso, Joseph R. Ecker, and Tai-ping Sun

DELLA Proteins and Gibberellin-Regulated Seed Germination and Floral Development in Arabidopsis
Plant Physiol. 2004 135: 1008-1019. First Published on June 1, 2004; 10.1104/pp.104.039578 [Abstract] [Full Text] [PDF] [Supplemental Data]  

Youfa Cheng, Xinhua Dai, and Yunde Zhao

AtCAND1, A HEAT-Repeat Protein That Participates in Auxin Signaling in Arabidopsis
Plant Physiol. 2004 135: 1020-1026. First Published on June 4, 2004; 10.1104/pp.104.044495 [Abstract] [Full Text] [PDF]  

ENVIRONMENTAL STRESS AND ADAPTATION:

Won-Yong Song, Enrico Martinoia, Joohyun Lee, Dongwoo Kim, Do-Young Kim, Esther Vogt, Donghwan Shim, Kwan Sam Choi, Inhwan Hwang, and Youngsook Lee

A Novel Family of Cys-Rich Membrane Proteins Mediates Cadmium Resistance in Arabidopsis
Plant Physiol. 2004 135: 1027-1039. First Published on June 4, 2004; 10.1104/pp.103.037739 [Abstract] [Full Text] [PDF]  

Ian M. Scott, Shannon M. Clarke, Jacqueline E. Wood, and Luis A.J. Mur

Salicylate Accumulation Inhibits Growth at Chilling Temperature in Arabidopsis
Plant Physiol. 2004 135: 1040-1049. First Published on June 1, 2004; 10.1104/pp.104.041293 [Abstract] [Full Text] [PDF]  

Gerrit West, Dirk Inzé, and Gerrit T.S. Beemster

Cell Cycle Modulation in the Response of the Primary Root of Arabidopsis to Salt Stress
Plant Physiol. 2004 135: 1050-1058. First Published on June 4, 2004; 10.1104/pp.104.040022 [Abstract] [Full Text] [PDF]  

GENETICS, GENOMICS, AND MOLECULAR EVOLUTION:

Ian S. Wallace and Daniel M. Roberts

Homology Modeling of Representative Subfamilies of Arabidopsis Major Intrinsic Proteins. Classification Based on the Aromatic/Arginine Selectivity Filter
Plant Physiol. 2004 135: 1059-1068. First Published on June 4, 2004; 10.1104/pp.103.033415 [Abstract] [Full Text] [PDF] [Supplemental Data]  

Jae-Heung Ko, Kyung-Hwan Han, Sunchung Park, and Jaemo Yang

Plant Body Weight-Induced Secondary Growth in Arabidopsis and Its Transcription Phenotype Revealed by Whole-Transcriptome Profiling
Plant Physiol. 2004 135: 1069-1083. First Published on June 11, 2004; 10.1104/pp.104.038844 [Abstract] [Full Text] [PDF] [Supplemental Data]  

Guanfang Wang, Hongzhi Kong, Yujin Sun, Xiaohong Zhang, Wei Zhang, Naomi Altman, Claude W. dePamphilis, and Hong Ma

Genome-Wide Analysis of the Cyclin Family in Arabidopsis and Comparative Phylogenetic Analysis of Plant Cyclin-Like Proteins
Plant Physiol. 2004 135: 1084-1099. [Abstract] [Full Text] [PDF] [Supplemental Data]  

PLANTS INTERACTING WITH OTHER ORGANISMS:

Mahmut Tör, Duncan Brown, Abigail Cooper, Alison Woods-Tör, Kimmen Sjölander, Jonathan D.G. Jones, and Eric B. Holub

Arabidopsis Downy Mildew Resistance Gene RPP27 Encodes a Receptor-Like Protein Similar to CLAVATA2 and Tomato Cf-9
Plant Physiol. 2004 135: 1100-1112. First Published on May 21, 2004; 10.1104/pp.103.037770 [Abstract] [Full Text] [PDF] [RETRACTION]  

Lionel Navarro, Cyril Zipfel, Owen Rowland, Ingo Keller, Silke Robatzek, Thomas Boller, and Jonathan D.G. Jones

The Transcriptional Innate Immune Response to flg22. Interplay and Overlap with Avr Gene-Dependent Defense Responses and Bacterial Pathogenesis
Plant Physiol. 2004 135: 1113-1128. First Published on June 4, 2004; 10.1104/pp.103.036749 [Abstract] [Full Text] [PDF] [Supplemental Data][Supplemental Data][Supplemental Data]  

Thomas Eulgem, Victor J. Weigman, Hur-Song Chang, John M. McDowell, Eric B. Holub, Jane Glazebrook, Tong Zhu, and Jeffery L. Dangl

Gene Expression Signatures from Three Genetically Separable Resistance Gene Signaling Pathways for Downy Mildew Resistance
Plant Physiol. 2004 135: 1129-1144. First Published on June 4, 2004; 10.1104/pp.104.040444 [Abstract] [Full Text] [PDF] [Supplemental Data]  

CORRECTIONS:

CORRECTION
Plant Physiol. 2004 135: 1145. [Full Text] [PDF]  

CORRECTION
Plant Physiol. 2004 135: 1146. [Full Text] [PDF]  

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