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First published online September 14, 2007; 10.1104/pp.107.105049 Plant Physiology 145:616-625 (2007) © 2007 American Society of Plant Biologists Unraveling the Difference between Invertases and Fructan Exohydrolases: A Single Amino Acid (Asp-239) Substitution Transforms Arabidopsis Cell Wall Invertase1 into a Fructan 1-Exohydrolase1,[C]Laboratory of Molecular Plant Physiology, Institute of Botany and Microbiology (K.L.R., W.L., B.D.C., A.V.L., W.V.d.E.) and Laboratory of Biocrystallography (W.L., M.V., A.R.), Katholieke Universiteit Leuven, B–3000 Leuven, Belgium
Plant cell wall invertases and fructan exohydrolases (FEHs) are very closely related enzymes at the molecular and structural level (family 32 of glycoside hydrolases), but they are functionally different and are believed to fulfill distinct roles in plants. Invertases preferentially hydrolyze the glucose (Glc)-fructose (Fru) linkage in sucrose (Suc), whereas plant FEHs have no invertase activity and only split terminal Fru-Fru linkages in fructans. Recently, the three-dimensional structures of Arabidopsis (Arabidopsis thaliana) cell wall Invertase1 (AtcwINV1) and chicory (Cichorium intybus) 1-FEH IIa were resolved. Until now, it remained unknown which amino acid residues determine whether Suc or fructan is used as a donor substrate in the hydrolysis reaction of the glycosidic bond. In this article, we present site-directed mutagenesis-based data on AtcwINV1 showing that the aspartate (Asp)-239 residue fulfills an important role in both binding and hydrolysis of Suc. Moreover, it was found that the presence of a hydrophobic zone at the rim of the active site is important for optimal and stable binding of Suc. Surprisingly, a D239A mutant acted as a 1-FEH, preferentially degrading 1-kestose, indicating that plant FEHs lacking invertase activity could have evolved from a cell wall invertase-type ancestor by a few mutational changes. In general, family 32 and 68 enzymes containing an Asp-239 functional homolog have Suc as a preferential substrate, whereas enzymes lacking this homolog use fructans as a donor substrate. The presence or absence of such an Asp-239 homolog is proposed as a reliable determinant to discriminate between real invertases and defective invertases/FEHs.
The nonreducing disaccharide Suc ( -D-Glc-(1 2)- -D-Fru; Fig. 1A
) is, besides starch, one of the most common reserve carbohydrates in plants, playing a key role in plant metabolism and development (Sturm and Tang, 1999 1- 2 glycosidic bond. In plants, this reaction can be catalyzed by two distinct enzymes: Suc synthase (EC 2.4.1.13) and invertases (EC 3.2.1.26). Suc synthase is a glycosyltransferase catalyzing the UDP-dependent reversible cleavage of Suc into UDP-Glc and Fru, whereas invertase irreversibly hydrolyzes Suc into Glc and Fru. Because the substrate and reaction products of invertases are not only important nutrients, but also regulators of different classes of genes, invertases are fundamental enzymes in the control of cell differentiation and plant development (Koch, 1996
Based on their subcellular localization, pH optima, solubility, and isoelectric point, three different types of invertase isoenzymes could be distinguished: vacuolar, cell wall-bound, and cytoplasmic invertases (Tymowska-Lananne and Kreis, 1998
Both vacuolar and cell wall invertases are grouped together with fructan biosynthetic and degrading enzymes and microbial
A phylogenetic tree containing deduced amino acid sequences from vacuolar and cell wall invertases and fructan biosynthetic and breakdown enzymes revealed that FEHs are more related to cell wall invertases than to fructan biosynthetic enzymes, which, in turn, are more related to vacuolar invertases. FEHs and cell wall invertases are believed to have evolved from a common ancestor (Van den Ende et al., 2000
To gain insight into (1) which amino acids determine the preference of Glu-Fru linkage (Suc, raffinose, stachyose) hydrolysis versus Fru-Fru linkage (1-kestose and higher degree of polymerization [DP] fructans) hydrolysis and, more particularly, (2) which amino acids are important for the binding and degradation of Suc, site-directed mutagenesis studies were performed focusing on the identification of putative important residues as determined by sequence and 3-D structure comparisons. To our knowledge, this is the first report specifically considering the difference between GH32 hydrolases only differing in donor substrate specificity (Suc versus fructan). All studies were performed on Arabidopsis cell wall Invertase1 (AtcwINV1; Arabidopsis gene code At3g13790), a genuine cell wall invertase (De Coninck et al., 2005
The Active Site of AtcwINV1 Consists of Three Highly Conserved Amino Acids
By multiple-sequence alignments of members of GH32, GH68, and GH43 (harboring
Presence of an Additional Asp/Asn Residue Is Important for Binding and Hydrolysis of Suc in AtcwINV1 A comparison of the AtcwINV1 and chicory 1-FEH IIa structures reveals some marked differences in their active site regions (Fig. 3 ). In AtcwINV1, an extra acidic residue (Asp-239) is observed in the vicinity of the conserved acid/base catalyst Glu-203 (Fig. 3A). An acidic amino acid is also found in 1-FEH IIa (Glu-234), but the acidic chain is twisted over 180° and oriented away from the active site (Fig. 3B). This different orientation is most probably due to the presence of a double deletion in the vicinity of this residue (Fig. 4 ). The presence of an Asp-239 homolog is highly conserved in cell wall invertases, a noticeable exception being Arabidopsis cell wall invertase 5 (Fig. 4). Besides cell wall invertases, vacuolar invertases in general also share this feature (data not shown). It can be hypothesized that the presence of an Asp-239 homolog contributes to the specificity of Suc recognition of plant acid invertases. By contrast, analogous to chicory 1-FEH IIa, all other known FEHs are generally characterized by the absence of such a structural Asp-239 homolog. In some cases, an acidic residue is present, but, analogous to chicory 1-FEH IIa, always surrounded by deletions (Fig. 4). Taking into account the orientation of Glu-234 in chicory 1-FEH IIa away from the active site, most probably due to a double deletion, it can be assumed that the presence of deletions in this region might be a reason for the absence of a structural Asp-239 homolog in FEHs.
Because polar forces (i.e. the formation of H-bonds between the side chains of polar amino acids and the hydroxyl groups of the carbohydrates) can play an important role in the recognition and binding of carbohydrate substrates in the active site, the possible role of Asp-239 in the binding and hydrolysis of Suc was further investigated by site-directed mutagenesis studies on AtcwINV1. Several mutants were constructed in which Asp-239 was changed into an Ala (D239A), a Phe (D239F), or an Asn (D239N). A comparison of the invertase activities of wild-type and mutant enzymes is presented in Figure 5 . The kinetic parameters of the purified mutant enzymes were determined and compared with those obtained for the wild-type invertase (Table II ). In both D239A and D239F mutants, Km increased 6- to 11-fold, respectively, inferring an important role for the Asp-239 residue in substrate binding. The lower substrate affinity of D239F compared to D239A can result from the more extended steric hindrance of the bulky Phe residue. A similar tendency is observed on kcat values, which decrease 10- to 20-fold, suggesting that Asp-239 is important for efficient catalysis as well. In contrast, Km and kcat values of the D239N mutant differ only slightly from the wild type, convincingly demonstrating that an acidic group is not essential at this position and can be replaced by an Asn. This is not surprising because both Asp and Asn, containing a carbonyl on their side chain, can form H-bonds with the substrate in almost exactly the same way. Conclusively, these data show that the presence of an additional Asp or Asn residue, adjacent to the Glu-203 proton donor, is important for optimal binding and efficient catalysis of Suc.
Remarkably, Asp-239 interacts very strongly with the Lys-242 residue (Fig. 3A), which can be considered as the structural homolog of the Arg-360 residue in B. subtilis levansucrase. It was demonstrated that Arg-360 fulfills a crucial role in the transfructosylation process and interacts via H-bonds with the bound substrate (Chambert and Petit-Glatron, 1991
A superposition of the B. subtilis levansucrase and AtcwINV1 structures strongly suggests that Glu-340 in levansucrase can be considered as the functional (but not structural) homolog of Asp-239 in AtcwINV1 (Fig. 6A
). The presence of a Glu or Gln besides the proton donor Glu-342 is strictly conserved in levansucrases, implying a possible important role for this residue in binding and/or degradation of Suc in these enzymes. Indeed, it was shown that Glu-340 forms strong H-bridges with the Glc moiety of Suc (O3 and O4 groups) in the active site of B. subtilis levansucrase (Fig. 6B; Meng and Fütterer, 2003
Taken together, our data strongly suggest that the presence of an extra Asp/Asn/Glu/Gln group in GH32 and GH68 Suc-metabolizing enzymes might be important for optimal binding and efficient catalysis of Suc. Overall, the presence or absence of a carbonyl-containing residue adjacent to the acid/base catalyst could be an important determinant of differences in substrate specificity between 1-FEH IIa and fungal exoinulinase (fructan as preferential donor), on one hand, and invertase and levansucrase (Suc as preferential donor) on the other hand. However, this general hypothesis should be further tested by additional site-directed mutagenesis work on a wider array of enzymes also including microbial invertases, fructan hydrolases, and levansucrases.
Besides polar forces that are involved in the carbohydrate recognition of various enzymes, it has been reported that other interactions can play a distinctive role. Depending on the stereochemistry of the carbohydrate monomers, the presence of a number of apolar C-H groups (aromatic residues) can play an important role by stabilizing the sugar-enzyme complexes by means of interactions between the aromatic and sugar rings through van der Waals contacts and CH- At the rim of the AtcwINV1 active site, there is a prominent presence of three Trp residues, namely, Trp-20, Trp-47, and Trp-82, together forming an aromatic zone (Fig. 3A). These residues belong to the conserved (among invertases) WMNDPN, WGN, and WSGSAT regions (Fig. 7 ). Mutagenesis experiments were performed in which these Trp residues were changed into a Leu. Determination of the kinetic parameters of the purified mutant proteins and comparison with the wild-type enzyme revealed an important role for these hydrophobic residues in substrate binding (Table III ). Km values increased 200, 600, and 120 times for the W20L, W47L, and W82L mutants, respectively, in comparison with the wild-type enzyme. The especially high value of the W47L mutant is not surprising because this residue is very close to the active site and the hydrophobic ring has a good orientation for interacting with the substrate. As a consequence of the very unstable substrate binding in all three mutants, the release of the Glc and Fru residues out of the active site probably takes place at a higher velocity, giving rise to an increase of the kcat values in two of the three cases.
Taken together, these data strongly suggest that the presence of an aromatic zone in the active site is important for optimal and stable binding of Suc in invertases. Interestingly, most FEHs lack a Trp-47 homolog at this position, but often contain a Phe, which has a less hydrophobic character compared to a Trp residue. A structural Trp-47 homolog can also be detected in T. maritima invertase (Trp-41) and A. awamori exoinulinase (Trp-65). On the contrary, such a homolog is absent in all levansucrases. However, in G. diazotrophicus levansucrase, His-172 might possibly fulfill an equal function because it is present at a similar position in the active site (Martinez-Fleites et al., 2005
Cell wall invertases can, besides Suc, degrade other substrates like 1-kestose, raffinose, and stachyose, although to a much lesser extent. Because 1-kestose is the preferential substrate of chicory 1-FEH IIa (De Roover et al., 1999
Strikingly, the D239A mutant showed superior affinity (Km 600 µM) for 1-kestose compared to the naturally occurring FEHs from chicory (1-FEH IIa: 58 mM; De Roover et al., 1999
Without exception, all functionally characterized FEHs lack an Asp-239 homolog and are unable to break down Suc (Van den Ende et al., 2000
The GH32 family harbors -fructosidases, invertases, FEHs, and various types of fructosyltransferases, differing only in their donor and acceptor substrate specificities. High levels of amino acid sequence similarities between these enzymes reveal evolutionary relationships. Fructan biosynthesizing enzymes are closely related to vacuolar invertases (Vijn and Smeekens, 1999 -fructosidase ancestor (Van den Ende et al., 2000
Cloning and Site-Directed Mutagenesis
Arabidopsis (Arabidopsis thaliana) AtcwINV1 (gene accession no. At3g13790) was cloned into the pPICZ
The methylotrophic yeast Pichia pastoris was used for extracellular gene expression as described in De Coninck et al. (2005)
For kinetic determination, appropriate aliquots of enzyme were mixed with Suc or 1-kestose (final concentration ranging from 250 µM to 1 M) in 50 mM sodium acetate buffer, pH 5.0. Reaction mixtures were incubated at 30°C for different time periods. Sodium azide (0.02% [v/v]) was added to prevent microbial growth. Total enzyme activity was determined by measuring the amount of released Fru by anion-exchange chromatography with pulsed amperometric detection (Van den Ende and Van Laere, 1996 Sequence data from this article can be found in the GenBank/EMBL data libraries under accession numbers: AY079422 (Arabidopsis cell wall invertase 1), AJ419971 (chicory [Cichorium intybus] vacuolar invertase), AJ295033 (chicory 1-FEH IIa), U81520 (chicory 1-SST), U84398 (chicory 1-FFT), P10594 (yeast [Saccharomyces cerevisiae] invertase), Q43171 (Solanum tuberosum cell wall invertase 1), X81834 (Nicotiana tabacum cell wall invertase), Q9M4K7 (S. tuberosum cell wall invertase 2), Q9M4K8 (S. tuberosum cell wall invertase 3), AJ272304 (tomato [Lycopersicum esculentum] cell wall invertase Lin5), Z35162 (Vicia faba cell wall invertase), AK118343 (Arabidopsis cell wall invertase 2), AB049617 (Arabidopsis cell wall invertase 4), X69321 (Daucus carota cell wall invertase 1), AF063246 (Pisum sativum cell wall invertase), Z35163 (V. faba cell wall invertase 2), X81792 (Chenopodium rubrum cell wall invertase), AB073749 (Oryza sativa cell wall invertase), AF030420 (wheat [Triticum aestivum] cell wall invertase), AF050129 (Zea mays cell wall invertase 1), AF050128 (Z. mays cell wall invertase 2), AF050631 (Z. mays cell wall invertase 3), AB029310 (Arabidopsis 6-FEH [ancient cell wall invertase 3]), BAB01929 (Arabidopsis cell wall invertase 5), AJ508534 (Beta vulgaris 6-FEH), AJ242538 (chicory 1-FEH), AJ295034 (chicory 1-FEH IIb), AJ509808 (Campanula rapunculoides 1-FEH), AY060533 (Arabidopsis 6&1-FEH [ancient cell wall invertase 6]), AJ516025 (wheat 1-FEH w1), AJ508387 (wheat 1-FEH w2), AB089269 (wheat 6&1-FEH), AJ605333 (Hordeum vulgare 1-FEH), AB089271 (wheat 6-KEH w1), AB089270 (wheat 1-FEH w2), DQ073968 (Lolium perenne 1-FEH), and AM075205 (wheat 6-FEH).
We thank Rudy Vergauwen for his outstanding technical assistance. We are also very grateful to Ed Etxeberria and Marc De Maeyer for critical reading of the manuscript. Received July 3, 2007; accepted September 7, 2007; published September 14, 2007.
1 This work was supported by the Fund for Scientific Research (grants to W.V.d.E. and A.R.) and the Institute for the Promotion of Innovation through Science and Technology in Flanders (grant to B.D.C.). The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (www.plantphysiol.org) is: Wim Van den Ende (wim.vandenende{at}bio.kuleuven.be).
[C] Some figures in this article are displayed in color online but in black and white in the print edition. www.plantphysiol.org/cgi/doi/10.1104/pp.107.105049 * Corresponding author; e-mail wim.vandenende{at}bio.kuleuven.be.
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