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Plant Physiology 137:1197-1204 (2005) © 2005 American Society of Plant Biologists Ubiquitin-Mediated Proteolysis. To Be in the Right Place at the Right Moment during Nodule Development1Institut des Sciences du Végétal, Centre National de la Recherche Scientifique Unité Propre de Recherche 2355, Avenue de la Terrasse, 91198 Gif-sur-Yvette, France
The cell cycle plays a crucial role in plant development. Organogenesis takes place throughout the lifetime and most cells maintain their ability to reenter and to regulate the cell cycle in response to a wide range of endogenous and external signals. In planta, phytohormones, particularly auxin and cytokinin, are essential for cell proliferation. New organs arise from local foci of proliferating cells, called meristems, which either persist or are de novo formed. In the organ primordium (initial stage of an organ before reaching maturity), cell differentiation starts with cell division arrest. These nondividing cells can exit the mitotic cycle with either complete loss or partial activity of the cell cycle. In the latter case, plant cells frequently enter an altered version of the cell cycle, known as endoreduplication cycles or endocycles, where the genome is duplicated without mitosis. Single or multiple rounds of endoreduplication cycles result in the formation of polyploid cells. The physiological role of ploidy is poorly understood.
Cell cycle progression is controlled by ordered action of cyclin-dependent kinases (CDKs), activated by defined cyclins, appearing for given periods in the cycle. When the function of a CDK-cyclin complex is accomplished, the associated cyclin partner becomes polyubiquitinated and destroyed by the ubiquitin-26S proteasome system (UPS). The vital importance of the UPS became evident during the last few years and its discovery was awarded by the Nobel Prize in Chemistry 2004 to Aaron Ciechanover, Avram Hershko, and Irwin Rose. The UPS is essential for many cellular processes including cell cycle, signal transduction and regulation of gene expression, circadian clocks, or phytohormone signaling pathways (Vierstra, 2003 This Update focuses on the possible implications of the ubiquitin-mediated proteolysis in differential regulation of the cell cycle in plant development using nitrogen-fixing root nodules of Medicago truncatula as a model organ. Nodules develop on the roots of legume plants in symbiosis with Rhizobium soil bacteria. One can ask whether studies on this legume-specific symbiotic organ can provide general information on cell cycle and differentiation that is also valid for other plant organs. The answer is yes. The plant encodes nodule development, which resembles, in many respects, lateral root development. Moreover, nodules have several advantages over other plant organs. First, their development can be programmed by application of Rhizobium signal molecules, the Nod factors, which allows studying the mechanisms of cell cycle reactivation and meristem formation from the instant of addition of the morphogen signal. Second, Medicago nodules are indeterminate, which means that the meristem remains active and generates cells that constantly enter differentiation. Thus, different stages of development can be monitored even in a mature nitrogen-fixing nodule. Third, in the submeristematic cell layers, endoreduplication cycles occur permanently. Such a local concentration of endocycling cells is rare and ideal to elucidate the mechanisms that generate polyploid cells in plants. In the following, we concentrate on two critical steps of nodule development: (1) how cell cycle is activated; and (2) how proliferating cells exit the mitotic cycle and enter differentiation via endoreduplication cycles.
Nodule development requires active photosynthesis and limited nitrogen supply. There are two major nodule types: the indeterminate and determinate nodules with permanently or transiently active meristem that originate from the inner and outer cortex, respectively. Indeterminate nodule development (Fig. 1) has been studied mainly in the symbiosis of Medicago sativa/M. truncatula with Sinorhizobium meliloti and Pisum sativum/Trifolium repens with Rhizobium leguminosarum. In these plants, Nod factors elicit dedifferentiation and cell cycle reentry of the cortical cells in front of the protoxylem poles in the emerging root hair zone. Cell division in the inner cortex and in the pericycle below the activated cortical cells results in the formation of the nodule primordium and the vasculature, respectively (Yang et al., 1994
Development of nodules and lateral roots displays common but also distinct features (Fig. 1). Both organs originate from de novo formed meristems initiated in front of the protoxylem/xylem poles. However, lateral roots develop from a more distal root zone than nodules and arise from division of pericycle cells. The lateral root primordium is smaller than the nodule primordium and it starts differentiation before its outgrowth from the root. Endoreduplication cycles also occur during lateral root development; however, only in a few cells and not exceeding the 8C ploidy level (Cebolla et al., 1999
Auxin is a key signal in plant development. The asymmetric distribution of auxin (termed auxin maxima) affects polarity and pattern formation and is required for embryonic, root, and shoot organogenic processes. Auxin is mobilized by auxin influx and efflux carriers, encoded by the AUX/LAX and PIN genes, respectively (Kramer, 2004
Several studies suggest that Nod factors affect local distribution and concentration of auxin. The use of the auxin-sensitive GH3 promoter-reporter gene fusion indicated transient inhibition of auxin transport by rhizobia and Nod factors, leading to transient accumulation of auxin at the site where indeterminate root nodules initiate (Mathesius et al., 1998
In the indeterminate legumes, ethylene provides positional information on cortical cell division. Expression of 1-aminocyclopropane-1-carboxylate synthase, encoding the last enzyme in ethylene biosynthesis, is localized to pericycle cells opposite to the phloem poles (Fig. 1, R; Heidstra et al., 1997
In eukaryotes, regulation of cell cycle has been attributed to the sequential activation of CDKs by cyclins. In Arabidopsis, 30 to 43 cyclins are predicted and the CDK family is composed of 12 proteins grouped in 6 types, from A to F (Vandepoele et al., 2002
In the cell cycle, specific cyclins are associated with G1 (cyclin D), S-phase (cyclin E and cyclin A), and mitosis (cyclin A and cyclin B). Cyclin E is missing from plants, while other cyclin types are present and represented by multiple members. In Arabidopsis (Arabidopsis thaliana), there are 9 or 10 D-type cyclins, 10 A-type, and 9 B-type cyclins (Vandepoele et al., 2002
By responding to nutrient and other signals, D-type cyclins are believed to have primary roles during G1 and G1-S transition. In Arabidopsis, cycD2 and cycD4 respond to sugar availability, while D3-type cyclins to cytokinin and brassinosteroid (Riou-Khamlichi et al., 1999
The diversity of A-type cyclins is plant specific. In contrast to a single cyclin A in animal cells, plants have three groups of A-type cyclins with multiple members in each. A-type cyclins function from S- to M-phase, but some of them may control S-phase entry (Roudier et al., 2000 The presented CDK-cyclin centric view on cell cycle control is an extreme oversimplification. Many important components such as the Rb-E2F pathway or CDK inhibitors have not been discussed here, as this minimal information is sufficient to discuss nodule primordium formation and differentiation.
UPS is the primary mechanism in eukaryotic cells for degrading unwanted and misfolded proteins (Fig. 3A; Ciechanover et al., 2000
The selection and specific timing of polyubiquitination of the target proteins are conferred by different E3 ubiquitin ligases. In the cell cycle, two structurally related multicomponent ubiquitin ligases, the anaphase-promoting complex (APC) and the Skp1/Cul1/F-box protein (SCF) complexes (Fig. 3B) have essential and complementary functions by temporally controlled degradation of various cell cycle proteins (Peters, 2002
Different F-box proteins provide the substrate-specificity of SCF. In Arabidopsis, the presence of almost 700 F-box proteins indicates the involvement of SCF in a wide range of cellular processes including various hormone responses. Auxin signaling is mediated by auxin-induced degradation of the Aux/IAA proteins by SCFTIR1, where TIR1 is an F-box protein (Gray et al., 1999
The APC is composed of 11 to 13 subunits in human and yeast (Saccharomyces cerevisiae) and homologous APC subunits have also been found in plants (Capron et al., 2003
Mitotic cyclins that contain a destruction or D-box in their N terminus were the first identified substrates of the APC. Both the Cdc20 and the Cdh1/Ccs52 proteins can mediate the degradation of mitotic cyclins; however, at different phases of the cell cycle. A-type cyclins are not only substrates but also regulators of the APC as phosphorylation of Cdh1 by cyclin A-associated CDK inactivates Cdh1 and abolishes its binding to the core APC. Similarly, phosphomimetic amino acid replacements in the Medicago Ccs52A protein inhibit the interaction of Ccs52A with the APC (Tarayre et al., 2004
Previous studies showed that Nod factors trigger reactivation of G0-arrested cells (Savouré et al., 1994
In the primary root, cycA2 expression was observed in the root apical meristem and faintly in the phloem cells (Fig. 1, R). cycA2 was induced at the onset of lateral root development, in the dividing cells and the lateral root primordium (Fig. 1, LR1 and 2). By differentiation of the primordium, cycA2 expression becomes restricted to the meristem (Fig. 1, LR3). During nodule organogenesis, cycA2 was induced 5 h after Nod factor treatment and the expression was maintained in the dividing cortical cells and in the nodule primordium (Fig. 1, N13). In nitrogen-fixing nodules, cycA2 was expressed only in the nodule meristem (Fig. 1, N4). In galls, expression of cycA2 was undetectable. Therefore, it is possible that the cycA2 function is linked to mitotic cycles, which lead to the formation of secondary meristems, but it is dispensable or even incompatible with endoreduplication cycles (Roudier et al., 2003
If cycA2 is involved in cell cycle reentry during lateral root and nodule initiation, it is expected that its expression is regulated by auxin. The cycA2 promoter contains two auxin-response-like elements. Treatment of M. truncatula roots with auxin or with a polar auxin transport inhibitor demonstrated that cycA2 is indeed auxin regulated (Roudier et al., 2003
After the formation of the nodule primordium, the next critical step is nodule differentiation that involves cell cycle arrest in the various nodule cell types but modified regulation of the cell cycle in the symbiotic cells. This raises the questions of how cell proliferation is arrested, how endocycles are triggered, and whether genome amplification has any biological meaning. Endoreduplication cycles result in periodic replication of the genome. This is achieved by the loss of M-phase and oscillations in the activity of S-phase cyclin-dependent kinase.
In nodule zone II, expression of CDKA, G1-, and S-phase specific marker genes indicates that cell cycle activities for DNA replication and endoreduplication cycles are present (Foucher and Kondorosi, 2000
The ccs52A gene is not expressed in the dividing cortical cells and in the growing nodule primordium. Ccs52A becomes activated in the fully grown primordium before differentiation and expresses in zones I and II of nitrogen-fixing nodules (Fig. 1, N3 and N4; Vinardell et al., 2003
As it was discussed before, phosphorylation by cyclin A-CDK inactivates the Cdh1-type APC activators. In human cells, depletion of cyclin A provoked a nonperiodic APC activity and endoreduplication cycles (Sorensen et al., 2000
But why are the nodule cells polyploid? Will a nodule be functional without endocycles? This was tested in ccs52A antisense plants where reduction of the ccs52A transcript level did not affect the formation of nodule primordia but aborted nodule development (Vinardell et al., 2003
During the past few years, enormous progress on the UPS highlighted the vital importance of this regulatory mechanism that turns off protein functions in the right place and at the right moment. Most knowledge on UPS arises from cell cycle studies where ordered destruction of proteins by the APC and SCF ensures unidirectional progression of the cycle. In plants, the discovery of the APC- and SCF-controlled processes is still at the elementary stage and out of hundreds or much more potential candidates, only a few are known as APC or SCF substrates. Future studies on the identification of novel targets and the APC- and SCF-regulated pathways will likely result in significant breakthroughs in understanding plant development. Data on degradation of plant cell cycle proteins are rather limited and it is unknown how hormone-signaling pathways communicate with the cell cycle. In M. truncatula, lateral root and nodule initiation depends on auxin maxima, formed de novo in front of the xylem/protoxylem poles and associated with the induction of an auxin-responsive cell cycle gene. Studies on nodule organogenesis have led to the identification of the plant APC activators, Ccs52A and Ccs52B, as well as to the discovery of APCCcs52A-mediated degradation of mitotic cyclins as a key regulatory mechanism inducing and driving endoreduplication cycles. Though endoreduplication is widespread in plants, until recently its mechanism and biological significance of polyploidy were poorly understood. Are the endocycles the cause or the consequence of differentiation? Several studies suggest that increased genome size may control cell size and may be required for faster cell growth and for increasing the storing capacity of cells. In addition, the multiple gene copies and the lack of chromosome condensation may enhance transcriptional and metabolic activities in polyploid cells. In the case of nodules, the polyploid genome is essential for the development of nitrogen-fixing symbiotic cells. This is likely needed for extreme cell enlargement to host a vast quantity of bacteroids as well as to modify nodule metabolism for symbiotic nitrogen fixation. In the coming years, the genome sequence of M. truncatula, transcriptome, proteome, and metabolome analyses of polyploid cells are expected to shed light on the physiological roles of endocycles. Received January 20, 2005; returned for revision February 7, 2005; accepted February 7, 2005.
1 This work was supported by the Spanish Ministerio de Educación y Ciencia Progam Becas Postdoctorales en España y en el extranjero 2003 (to M.R.-N.). www.plantphysiol.org/cgi/doi/10.1104/pp.105.060004. * Corresponding author; e-mail eva.kondorosi{at}isv.cnrs-gif.fr; fax 33169823695.
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