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Plant Physiology 135:660-667 (2004) © 2004 American Society of Plant Biologists Ethylene Signal Transduction. Moving beyond ArabidopsisPlant Molecular and Cellular Biology Program, University of Florida, Gainesville, Florida 32611
Phytohormones are responsible for integrating many aspects of plant growth and development. They modulate how fast and in what direction an organ grows. And in many cases, they determine the point at which it will die. Hormones are the signals that integrate internal developmental and external environmental inputs and translate them into appropriate responses. Plants have many ways in which to modulate hormonal responses. Regulation can occur at the level of synthesis, transport, uptake, and turnover of the hormone. Regulation can also occur at the level of perception or signal transduction. Hormone sensitivity can, in turn, be regulated both spatially and temporally. For example, during organ abscission adjacent cells respond differentially to hormonal signals. In contrast, fruit ripening involves changes in sensitivity of the organ over time. Here, the term sensitivity refers to the response of a tissue or organ to a hormone. A change in sensitivity indicates that the concentration of hormone necessary to initiate a response is altered. For reasons described here, tomato (Lycopersicon esculentum) is an ideal system to study developmentally controlled changes in hormone responsiveness.
Ethylene is a small, readily diffusible hormone that has an important role integrating developmental events with external stimuli. It is a critical component of such diverse developmental processes as seed germination, fruit ripening, abscission, and senescence (Abeles et al., 1992 Why do we study a signal transduction pathway in any organism but Arabidopsis? Let me count the ways. Perhaps the most obvious reason to study tomato, as opposed to Arabidopsis, is to exploit the anatomical differences. The role of ethylene in promoting ripening in fleshy fruits is well established. But other processes are ideally suited to tomato as well. For example, the anatomically distinct pedicel abscission zone is exquisitely sensitive to ethylene. Also, flower and, to a lesser extent, leaf senescence as well as adventitious root formation are all dependent upon ethylene signaling. But at a more fundamental level, we must assess the robustness of models developed in plants such as Arabidopsis. Indeed, with the critical role of ethylene in mediating environmental responses, we would not expect that an annual rosette plant would behave like a perennial vine. In the end, it is only by elaborating the differences between species that we come to understand the unifying principles. In this article the focus is on ethylene signal transduction in tomato. Although multiple components of the pathway have been identified, we know the most about the receptors. Thus, we emphasize the earliest step in ethylene signal transduction. There appear to be significant differences in the way ethylene signaling is regulated in Arabidopsis and tomato. But the building blocks of ethylene signal transduction are very similar between the species. Thus, we exploit Arabidopsis genetics to identify the genes and then address the way they fit together in tomato.
A critical breakthrough in understanding ethylene signal transduction was the recognition that germination of seeds in the presence of ethylene could be used in large-scale screens for insensitive mutants (Bleecker et al., 1988
Epistatic analysis has permitted researchers to place the Arabidopsis genetic elements in an order that provides a framework for experimentation (for review, see Wang et al., 2002
Hormone signaling must necessarily start with the receptor and intuitively, it is logical that a receptor would be a key point of regulation. The ethylene receptor ETR1 was the first protein to be unambiguously identified as a phytohormone receptor. It was also the first protein with homology to His kinases to be identified in a higher eukaryote (Chang et al., 1993 The sensor domain contains three hydrophobic, putative transmembrane stretches. Ethylene binding occurs within this amino terminal hydrophobic region and all of the known ETR1 mutations are located within this portion of the protein. Three of the receptors, EIN4, ETR2 and ERS2 are predicted to have a fourth membrane-spanning domain. The amino terminal domain mediates dimerization and copper binding. The GAF domain, which is conserved among a range of diverse proteins, lies immediately C-terminal to the ethylene binding domain. Its function in ethylene signaling is unknown.
The kinase domain has extensive sequence homology to His kinases (HK). There are five subdomains that define the catalytic core of His kinases. While ETR1 and ERS1 contain all of these subdomains, the other three receptors lack one or more of them. Notably, ETR2 and ERS2 lack the His that is autophosphorylated. This His is not essential for the dominant ethylene insensitivity conferred by etr1-1 (Gamble et al., 2002 The receiver domain has sequence identity to the output portion of bacterial two-component systems and contains an Asp that is active in phosphorelay in bacterial proteins. As in bacteria, some members of the plant ethylene receptor family are missing the receiver domain; ERS1 and ERS2 lack it while the other three contain it. That some of these proteins maintain the receiver domain with a high degree of conservation while others completely lack it suggests an important but undetermined function for this domain. Based on structural and DNA sequence comparisons, the receptors have been classified as Subfamily I or Subfamily II. The Subfamily I receptors, ETR1 and ERS1, have the highest conservation of the His kinase elements. Overall sequence comparisons, including intron positioning, support this classification. Despite these structural and functional differences, most of the genetic evidence is consistent with redundant receptor function.
All of the receptor mutants display semidominant ethylene-insensitive phenotypes. Single gene knockouts, in contrast, have no obvious phenotype. Experiments using combinations of receptor knockouts indicate that they act as negative regulators of ethylene responses (Hua and Meyerowitz, 1998
Genes encoding the two committed steps to ethylene synthesis, ACC synthase (ACS) and ACC oxidase, are under tight transcriptional control, being induced by multiple developmental and stress cues (Wang et al., 2002
In addition to temporal control of fruit ethylene responses, there is spatial control. Fruits do not ripen uniformly. Ripening begins in internal tissue. It then proceeds toward external tissue progressing from the blossom end toward the calyx. Ethylene is a readily diffusible gas within the confines of a fruit. In fact, the skin of a tomato fruit is relatively impermeable to ethylene diffusion and the gas builds up to high internal levels throughout the fruit. Thus, differential spatial ripening within the fruit can only be explained by differential signal transduction. A further level of complexity in the developmental regulation of ethylene responses relates to the memory of immature fruits with respect to ethylene exposure. Although an immature fruit will not initiate ripening upon exposure to exogenous ethylene, that exposure will hasten the onset of ripening (Yang, 1987
While much is known about regulation of ethylene synthesis in tomato, less is known about its perception and signal transduction. We identified a tomato mutant that is altered in its ability to perceive ethylene. Never ripe (Nr) is a semidominant ethylene receptor mutant (Wilkinson et al., 1995
In tomato, there are six ethylene receptors (LeETR16; for review, see Klee and Tieman, 2002
Each tomato receptor gene has a distinct pattern of expression throughout development and in response to external stimuli (Klee, 2002
Although there is evidence that expression of the Arabidopsis receptor genes is regulated by ethylene (Hua et al., 1998
All of the genetic evidence supports a model in which ethylene receptors act as negative regulators. In this context, we consider the importance of receptor expression for regulating overall ethylene response. The model predicts an inverse correlation between receptor levels and ethylene sensitivity of a tissue. This model assumes that there is a threshold effect of ethylene. Once a certain percentage of receptors become inactivated by binding hormone, ethylene effects are manifested. More ethylene is required to inactivate high receptor levels than to inactivate low receptor levels. This is why receptor knockouts exhibit constitutive ethylene responsiveness despite unaltered levels of the hormone; basal levels of ethylene synthesis are sufficient to inactivate the full complement of receptors (Fig. 1B). A further factor to consider is that receptors apparently have a very long half-life for ethylene dissociation. The measured KD for yeast-expressed ETR1 was approximately 12 h (Schaller and Bleecker, 1995
The available tomato data support the model. While most of the data are limited to RNA accumulation, we have measured the levels of NR protein with antibodies in both over- and underexpressing lines and there is a good correlation between RNA and protein levels for this receptor. Plants constitutively overexpressing the wild-type NR cDNA accumulate more protein and are less sensitive to ethylene, as measured by triple response and pathogen assays (Ciardi et al., 2000
Why do the single gene LeETR4 loss-of-function plants differ from those that are reduced in several of the other receptors? The explanation lies at least in part upon a response termed functional compensation (Tieman et al., 2000
Increased expression of LeETR4 in response to pathogen infection is an important aspect of disease response. This gene is induced during the hypersensitive response triggered by infection with Xanthomonas campestris pv. vesicatoria (Ciardi et al., 2000 There are significant alterations in expression of multiple receptors in tomato, both during development and in response to external stimuli. In every known ethylene response, expression of one or more receptors increases. Even though reduced expression increases ethylene sensitivity, there are no examples where this response has been reported to occur. Rather, tomato initiates an ethylene response through the finely tuned system of ethylene synthesis. Once initiated, increased ethylene synthesis is followed by increased receptor synthesis. While it seems counterproductive to reduce hormone sensitivity following synthesis, this is a typical phytohormones response. A rapid increase in a hormone induces mechanisms to inactivate the response. Thus, it is normal for a plant to act to reduce a hormone response shortly after it is initiated. Increased ethylene receptor synthesis would be an effective means to achieve this outcome.
The patterns of receptor gene expression do not make sense in the context of fruit ripening. Receptor levels are generally high in ovaries at anthesis and decline until the onset of ripening, when there is a large increase that coincides with ripening-associated ethylene. Thus, at the time when ethylene exerts its greatest effect on fruit development, receptor gene expression is at its highest level. This higher rate of receptor synthesis must reduce ethylene responsiveness of the tissue. In the context of receptors as negative regulators of ethylene responses, this ripening-associated increase is paradoxical. However, during fruit ripening ethylene is synthesized far in excess of what is needed to drive the process forward. Any reduction in ethylene sensitivity caused by higher receptor gene expression would be more than offset by climacteric ethylene synthesis. This general pattern of receptor accumulation has been observed in multiple climacteric fruits (Sato-Nara et al., 1999 The constant low expression of receptor genes during the immature phase of fruit development could provide a mechanism for the fruits to monitor cumulative exposure to ethylene. If ethylene binding inactivates receptors for an extended period, eventually cumulative ethylene exposure would deplete the tissue of functional receptors. If ethylene synthesis exceeds receptor synthesis on a molar basis, the fruit will become progressively more sensitive to ethylene as they mature. When a fruit reaches a critical threshold of ethylene sensitivity, the ripening program would be triggered. Although speculative, the model is testable and consistent with what is known about gene regulation.
There is not a lot of information available on the downstream signaling elements involved in ethylene signaling. The available information argues against ripening control at the level of transcription of the downstream components. There are at least three genes encoding proteins with significant homology to CTR1 in tomato. One of these, LeCTR1, has been shown to functionally complement the Arabidopsis ctr1 mutation (Leclercq et al., 2002
Genes encoding other downstream components of ethylene signaling that have been examined do not show any degree of transcriptional regulation. LeEIN2 is encoded by a single gene, as it is in Arabidopsis. Gene expression is unaltered during fruit development and is not ethylene inducible. Antisense reduction of expression delays ripening, as would be predicted upon loss of function (D. Tieman, J. Ciardi, and H. Klee, unpublished data). In the case of EIN3, there is a family of three tomato genes (Tieman et al., 2001
The work that has been done over the last decade to define the ethylene signaling pathway in Arabidopsis has been nothing short of spectacular. It would have been impossible to assemble such a comprehensive understanding of the individual components in any other species. But once a framework has been established, it is essential that it be tested outside of a model organism. Ethylene plays such a critical role in integrating both developmental and environmental cues into overall growth that it would be naïve to assume any model developed for one organism would be universal. Indeed, tomato has evolved to use ethylene to control processes that do not even exist in Arabidopsis. In this regard, it is remarkable how much conservation of function does exist between the species. A snapshot taken today indicates that there are levels of control over ethylene signaling in tomato that have not been observed in Arabidopsis. Whether this is because the two species have evolved in different ways or because we simply haven't looked at Arabidopsis closely enough remains to be determined. In the end, critical comparisons of multiple species are likely to change our understanding of them all. Received February 13, 2004; returned for revision April 12, 2004; accepted April 12, 2004.
www.plantphysiol.org/cgi/doi/10.1104/pp.104.040998. * E-mail hjklee{at}ifas.ufl.edu; fax 3528462063.
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