Department of Biological Sciences, The University of
Toledo, Toledo, Ohio 43606 (J.G.); Division of Science, Truman State
University, Kirksville, Missouri 63501 (D.J.-B., B.B.); Hickman High
School, Columbia, Missouri 65202 (P.S.C.); and Department of Botany and
Plant Pathology, Purdue University, West Lafayette, Indiana 47907 (G.S.J.)
We reported previously the isolation of a novel cell
death-suppressing gene from maize (Zea mays) encoded by
the Lls1 (Lethal leaf spot-1)
gene. Although the exact metabolic function of LLS1 remains
elusive, here we provide insight into mechanisms that underlie the
initiation and propagation of cell death associated with
lls1 lesions. Our data indicate that lls1
lesions are triggered in response to a cell-damaging event caused by
any biotic or abiotic agent or intrinsic metabolic imbalance
as long
as the leaf tissue is developmentally competent to develop
lls1 lesions. Continued expansion of these lesions,
however, depends on the availability of light, with fluence rate being
more important than spectral quality. Double-mutant analysis of
lls1 with two maize mutants oil-yellow
and iojap, both compromised photosynthetically and unable to accumulate normal levels of chlorophyll, indicated that it
was the light harvested by the plant that energized lls1
lesion development. Chloroplasts appear to be the key mediators of
lls1 cell death; their swelling and distortion occurs
before any other changes normally associated with dying cells. In
agreement with these results are indications that LLS1 is a
chloroplast-localized protein whose transcript was detected only in
green tissues. The propagative nature of light-dependent
lls1 lesions predicts that cell death associated with
these lesions is caused by a mobile agent such as reactive oxidative
species. LLS1 may act to prevent reactive oxidative species formation
or serve to remove a cell death mediator so as to maintain chloroplast
integrity and cell survival.
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INTRODUCTION |
lls1 (lethal leaf
spot-1) is a maize (Zea mays) mutation, characterized
by the formation of necrotic spots that expand continuously to kill the
entire leaf and eventually the whole plant. The developmentally programmed phenotype of lls1 manifests in a cell autonomous
fashion as evidenced by the discrete border between mutant and
revertant tissue in sectored plants (Gray et al., 1997
)
and is suggestive of the involvement of an endogenous program in
lls1 cell death. Because this mutation is inherited in a
strictly recessive fashion, it is likely that the wild-type
Lls1 gene functions to positively maintain cell homeostasis
(Ullstrup and Troyer, 1967
; Johal et al.,
1994
). The Lls1 gene has been cloned. Although it
appears to encode a novel protein specific to plants, it does have two motifs, a Rieske-type Fe-sulfur center and a mononuclear non-heme Fe-binding site, that are found in the aromatic ring-hydroxylating dioxygenases of bacteria. Because of the fact that the biochemical function of these enzymes is to degrade aromatic hydrocarbons, we
hypothesized previously that LLS1 may also work by breaking down a
phenolic mediator of cell death in plants (Gray et al., 1997
). This proposal remains contentious, however, because the nature of the substrate, if any, for LLS1 remains unknown and we have
now found these motifs in a small family of plant enzymes, two of which
are known to function in chlorophyll b and Gly betaine biosynthesis (below).
The lls1 mutation belongs to a class of defects in plants
called disease lesions mimics in which lesions resembling infection sites are formed in the absence of a pathogen (Greenberg,
1997
; Morel and Dangl, 1997
; Gray and
Johal, 1998
; Buckner et al., 2000
). Several of
these genes have now been cloned in anticipation of identifying
molecular components that play a direct role in controlling cell death
and the hypersensitive response (HR) in plants (Morris et
al., 1998
; Kliebenstein et al., 1999
; Yin
et al., 2000
). These studies reveal that lesion mimic genes
encode a variety of functions including membrane receptors
(Mlo and Rp1), a putative transcription factor
regulating superoxide dismutase (Lsd1), and salicylate and
sphingolipid signaling (Acd6 and Acd11; Hu
et al., 1996
; Buschges et al., 1997
;
Collins et al., 1999
; Devoto et al.,
1999
; Kliebenstein et al., 1999
; Rate et
al., 1999
; Sun et al., 2001
; Broderson et al., 2002
). The genes underlying other lesion mimic phenotypes appear to play a more direct role in maintaining cellular homeostasis. Blockage of metabolic processes such as the synthesis or degradation of
chlorophyll (by Les22-encoding uroporphyrinogen
decarboxylase and acd2-encoding red chlorophyll catabolite
reductase, respectively), results in the accumulation of porphyrin
intermediates that become toxic free radicals when cells are exposed to
excess light (Hu et al., 1998
; Molina et al.,
1999
; Ishikawa et al., 2001
; Mach et
al., 2001
). A deficiency in fatty acid biosynthesis (by
the mod1 gene encoding an enoyl-acyl carrier protein
reductase) causes pleiotropic effects on plant growth and results in
premature cell death (Mou et al., 2000
).
Although there is a ubiquitous association of these mutants with tissue
death, careful examination is required to determine which ones may
represent defects in genes and mechanisms that control programmed cell
death (PCD; Greenberg, 1997
; Morel and Dangl, 1997
; Gray and Johal, 1998
;
Buckner et al., 2000
, Mou et al., 2000
).
Our knowledge of how plants might accomplish PCD remains rudimentary.
In animal studies, the cellular features of PCD events such as cell
shrinkage, membrane blebbing, and phagocytosis by neighboring cells are
widely recognizable (Haecker, 2000
). The nDNA of dying
cells is degraded into oligonucleosomal ladders. A class of Cys
proteases termed caspases enables such dismantling of the cell.
Produced as zymogens, caspases are kept in check directly or indirectly
by suppressors of cell death. Some of these suppressors of cell death
do so by maintaining the integrity of mitochondria (Hengartner,
2000
). When animal cells are accidentally injured they exhibit
a swelling of the cell and organelles known as oncosis evidenced later
by chromatin clumping and phagocytosis (Majno and Joris,
1995
). The extent to which similar molecular components
participate in the apoptotic and oncotic cell death pathways is not yet
fully known.
Although studies of lesion mimics have identified genes and
mechanisms that are largely unique to plants, only in a few cases have
the details of how cells affected in each of these mutants undergo cell
death. Do they follow the paradigm of apoptotic cell death, which is
shown to be conserved biologically across the entire animal kingdom, or
do they follow a sequence of events that is unique to plants? The
present investigation was undertaken to explore the nature of cell
death mechanisms that underlie the initiation and propagation of
lls1 lesions. The results obtained clearly support a central
role for light absorbed by chloroplasts in lls1 cell death.
Although the results do not indicate that lls1 cells undergo
a PCD event, they do prompt the idea that the regulation of chloroplast
integrity should be considered as a possible means by which some cell
death events may be controlled in plants.
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RESULTS |
lls1 Lesions Exhibit Some Features of Cell Death
Induced by Infectious Agents
Plants often respond to pathogens by unleashing a cell death
program at or around the site of infection (Hammond-Kosack and Jones, 1996
). This cell death reaction, often associated with HR, results in cellular collapse and the formation of necrotic lesions.
Necrotic regions where irreversible membrane damage or cell death has
occurred are apparent when lls1 lesions are stained with
trypan blue (Fig. 1, A and B;
Dietrich et al., 1994
). Two cytological markers that are
almost always found associated with the HR are the deposition of
callose and the accumulation of autofluorescent lesions in and around
infection sites (Aist et al., 1988
; Koga et al.,
1988
). To assess whether lls1 lesions exhibit
features characteristic of HR lesions, we monitored the induction of
these responses during the development of lls1 lesions.
Callose deposition was observed in most cells within lls1
lesions. The BS cells were the first to form callose, deposited as
plugs in the plasmodesmatal pit fields (Fig. 1, C and D). This callose
response was observed several vascular bundles distant from the actual
lesion site, indicating that a stress signal emanating from the dying
cells triggered the response. Autofluorescence, which is thought to reflect accumulation of stress-related phenolic compounds, was also
observed in lls1 lesions (Fig. 1, E and F). It appeared to be restricted to dying tissue. These results show that lls1
lesions exhibit some features of cell death that are associated with
the HR. We also attempted to discern if DNA fragmentation, which is a
marker of some plant PCD events, occurs in lls1 dying cells. We did not detect an oligonucleosomal ladder in lls1
lesioned leaves but this may have been because of the asynchronicity of rapidly dying cells in these lesions (data not shown).

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Figure 1.
Histological features and inducible expression of
lls1 lesion phenotype during development. A, White light
trans-illumination of an lls1 lesion (5×). B, Trypan blue
staining in area of necrosis of same lesion, as in A. C, Callose
plugging of plasmadesmatal fields in BS cells of an lls1
plant. Picture shows aniline blue-stained unsectioned leaf tissue
observed under UV light. Black arrow indicates an individual BS cell
outside the periphery of the observable dying cells (which is to the
left of the field) that has begun to deposit callose in the
plasmadesmatal fields. The white arrow indicates the location of a
neighboring xylem cell in the vascular bundle. D, Cartoon indicating
bundle sheath (BS) and xylem cell boundaries in A. The plasmadesmatal
pit fields, containing up to 100 plasmadesmata/pit fields, are
highlighted for one cell in blue. E, White light trans-illumination of
an lls1 lesion (40×). F, Blue-light autofluorescence of
same lesion as in E. G, Developmental expression of lls1
lesions. Field-grown lls1-ref/lls1-ref plant at
the nine-leaf stage. H, Close-up view of typical spreading lesions on
an expanded leaf of an lls1-ref/lls1-ref plant
grown under field conditions. Occasionally, the concentric rings
exhibit a dark coloration as shown here. I, Close-up view of
field-grown lls1 lesions showing the concentric ring
appearance of lesions and elongate shape of lesions. J, Time lapse
series showing expansion of an individual lls1 lesion over a
period of 96 h. The ruler markings in each picture are 1 mm apart.
K, Lesions induced in an lls1/lls1 plant 7 d after
infection with a nonpathogenic strain of C. carbonum. L,
Lesions induced in a region of an lls1/lls1 leaf by pinprick
wounding 4 d earlier. This region of the leaf was competent for
lesion formation but normal spontaneous lesions had not yet progressed
to this region of the leaf. M, Spontaneous lesion development on an
lls1/lls1 plant from a population segregating for
Les101 and lls1. Lesions exhibit a low density.
N, Spontaneous lesion development on an Les101 plant from a
population segregating for Les101 and lls1.
Lesions exhibit a high density. O, Spontaneous lesion development on an
Les101/+ lls1/lls1 plant from a population
segregating for Les101 and lls1. Lesions are
initiated as les101 lesions and progress to an
lls1 phenotype with a density that of Les101
lesions.
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Cellular Damage Is Required for lls1 Lesion
Initiation
Lesion mimics have been categorized into two classes: those in
which lesions stay small and discrete (initiative class), and those in
which lesions, once formed, continue to expand (propagative class). The
initiative class mutants may have defects that inappropriately trigger
a cell death program, whereas mutants of the propagative class may have
defects in negative regulators of cell death (Walbot et al.,
1983
; Greenberg and Ausubel, 1993
;
Dietrich et al., 1994
; Johal et al.,
1994
). We described previously how the lls1
phenotype follows a developmental gradient with lesions forming first
near the tip of the oldest leaf and then gradually moving downward toward its base (Johal et al., 1994
; Gray et al.,
1997
). This pattern is repeated progressively on every leaf up
the plant (Fig. 1G). However, within a region of a leaf that has
attained developmental competence, lls1 lesions appear to
form in a random pattern (Fig. 1H). Once initiated, lls1
lesions then continue to expand and often appear to be slowed by leaf
veins leading to a longitudinal appearance (Fig. 1, I and J). This
expansion was measured over time (Fig. 1J) and it is estimated that
longitudinal expansion (7.7 mm d
1) occurs
approximately 5.6 times faster than latitudinal expansion (1.8 mm
d
1). The continuous lesion expansion implies
that lls1 mutation is defective in a mechanism involved in
the containment of cell death. The impedance of the spread of cell
death by vascular bundles suggests dilution of a diffusible cell
death-promoting factor or alternatively the reduced production of the
factor by non-photosynthetic vascular cells. These observations
prompted the closer examination of the immediate events that underlie
lls1 lesion formation.
To address this, we treated mutant plants in a variety of ways. First,
we asked how lls1 plants react to pathogens that trigger HR.
This was accomplished by inoculating lls1 seedlings with an avirulent strain of Cochliobolus carbonum that induces only
necrotic flecks at the site of penetration (Johal and Briggs,
1992
). Initially, the tissue reacted by producing flecks, which
appeared at the same rate and intensity as they did on wild-type
siblings. However, as the competence to form lls1 lesions
developed, most sites expanded to form lls1 lesions on
mutant leaves (Fig. 1K). Inoculations with other maize pathogens,
including C. heterostrophus and Puccinia sorghi,
gave similar results (data not shown), which indicated that some
general stress associated with pathogen invasion probably provided a
trigger for lls1 lesion initiation.
To test whether this stress was caused by physical injury associated
with fungal penetration, lls1 leaves were wounded by pinpricks. Like infection sites, all wound sites transformed into lls1 lesions when the tissue acquired the potential to
express the mutant phenotype (Fig. 1L), suggesting that a damaged or
dying cell can serve as the trigger for lls1 lesion
initiation. This conclusion is supported by the additive phenotype of
double mutants in which lls1 was coupled either with
Les-101 or Les-22. The latter are two dominant
Les mutations of the initiation class, whose production of
lesions preceded those caused by lls1 (Fig. 1, M-O; Johal et al., 1994
). In the case of Les101,
lesions also form at a much higher density (136.3 ± 21.2 lesions/unit area2) than "spontaneous"
lls1 lesions on similarly aged leaves (2.5 ± 1.4 lesions/unit area2). We inspected
Les101/lls1 double mutants over successive days and
monitored the progression of individual lesions in a time lapse
fashion. The phenotype was initially of the respective Les type, however, as the leaf acquired developmental competence to express
lls1 many Les lesions transformed into
lls1-like lesions (Fig. 1O; an increased lls1
lesion density of 19.5 ± 5.9 lesions/unit area2) that rapidly expanded to overlap with
other Les lesions and consume the whole leaf. Taken
together, these results clearly indicate that biotic or abiotic
cellular damage, irrespective of the nature of the agent that caused
it, serves as a signal to initiate an lls1 lesion. Even
so-called "spontaneous" lesions that form on lls1 plants
in the apparent absence of any wounding (e.g. in a growth chamber) may
reflect an unidentified endogenous stress such as the accumulation of a
phototoxic metabolite (see below).
Light Harvested by Photosynthetic Tissue Is Required for
lls1 Lesion Formation
The lls1 lesions typically exhibit alternating circles
of light and dark necrotic tissue, suggesting that expansion of
lls1 lesions is subject to influence by environmental
factors (Fig. 2A). Because concentric
rings largely disappear when lls1 mutants are grown under
continuous illumination (Fig. 2B), light may play a role in the
expression of lls1 lesions. To investigate this possibility,
maize leaves were covered with aluminum foil at different stages of
lesion development. Macroscopic lesions did not form on covered parts
of the leaf, and the ones that had already initiated stopped growing
once the leaf was covered (Fig. 2C). We have not determined absolutely
that microscopic cell death is inhibited in the dark but the growth of
lesions induced by mechanical wounding was similarly impeded (data not
shown), indicating that light plays a deciding role at least in
lls1 lesion expansion, if not also lesion induction.

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Figure 2.
Requirement of light for lesion development and
suppression of the lls1 phenotype in photosynthetically
compromised mutants. A, Multiple initiation points for cell death
during diurnal cycle. Image shows close-up view of a dead
lls1/lls1 lesioned leaf that was grown with an approximately
16-h-light/8-h-dark cycle. The center of each set of concentric rings
represents the initiation points of cell death in this leaf region. B,
"Wave" of cell death during continuous illumination. Image shows
close-up view of a dying lls1/lls1 lesioned leaf that was
grown under continuous illumination in a growth chamber. Cell death is
seen to process as a wave from the tip of the leaf toward the base as
opposed to a confluent "leaf spot" pattern. C, Requirement of light
for lesion formation in an lls1/lls1 plant. The leaf shown
was protected by wrapping aluminum foil around the region indicated by
the arrow. Lesions developed in the region exposed to light but not in
the protected region. A similar protective effect was observed for
lesions induced by pinprick wounding (not shown). D, Light intensity
versus wavelength experimental arrangement. Leaf regions not yet
exhibiting lesions were protected by foil or a transparent plexiglass
filter (red for the leaf shown here) around the region indicated by the
arrow. After lesion formation on the lower side of the covered region,
the filter was removed and the underlying tissue examined for lesions.
Here, a red plexiglass filter 3 mm in thickness prevented lesion
formation. E, Suppression of lls1 lesion formation in
pale-green or albino sectors of an iojap (ij) mutant.
Lesions developed in an lls1/lls1 ij/ij plant but only in
dark-green tissue. Lesions formed on either side of pale green or
albino sectors but never within the albino sectors. F, Suppression of
lls1 lesion formation in pale-green or albino sectors of an
iojap (ij) mutant. Lesions developing in a narrow green
sector propagate lengthways but not into the neighboring albino
sectors. G, Suppression of lls1 lesion formation in
pale-green or albino sectors of an iojap (ij) mutant. In
this instance, an lls1 lesion appears to "traverse" a
narrow pale green sector (arrow). H, Les4 lesions will form
in the albino sectors of an iojap (ij) mutant. The lesions
of the dominant lesion mimic les4 formed in both pale-green
and albino sectors (shown) of a Les4/+ ij/ij double mutant
plant. I and J, Albino sector of an ij/lls1 leaf traversed
by an lls1 lesion is still alive. The dead tissue of a leaf
section viewed by white light in I is revealed by trypan blue staining
in J. K, Suppression of lls1 lesion formation in pale-green
sectors of an ncs7 mutant. Lesions developed in an
lls1/lls1 NCS2 plant but only in dark-green tissue. L,
Suppression of lls1 lesion formation in an
oy1-700 mutant. Similarly positioned leaves from field-grown
plants of the same age are compared from a population segregating for
lls1 and oy1-700. The plant on the right
(lls1/lls1 Oy1-700) exhibits typical lls1 lesion
development, whereas the plant on the left (lls1/lls1
oy1-700/+) exhibited smaller lesions that did eventually coalesce
but at a greatly reduced rate. The reduction of lesion formation in
lls1/lls1 oy1-700/+ plants often caused the suppression of
lls1/lls1 lethality (permitting seed set).
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To investigate whether it was the quantity or quality of light that
allowed lls1 lesion expansion, mutant leaves were covered with plastic filters that allowed transmission of different wavelengths of light. Except for the far-red filter, which transmitted less than
1% of incident sunlight (approximately 7 µmol
m
2 s
1), none of the
filters could prevent lesion progression under full exterior sunlight
(1,600-1,700 µmol m
2
s
1). Under greenhouse conditions where overall
incident light was approximately 25% of full sunlight, filters that
transmitted approximately 40 µmol m
2
s
1 or less provided a protective function (Fig.
2D). These results are consistent with the conclusion that
lls1 lesions are promoted by a higher fluence rate of
incident light, but they do not reveal if it was specifically the light
harvested for photosynthesis that was responsible for lls1
lesion growth.
We used a genetic approach to further explore this question. We
generated double mutants of lls1 with ij1
(iojap-1), NCS2 (non-chromosomal stripes), and
Oy1-700 (Oil yellow-1), which are all
compromised in their ability to capture light or photosynthesize effectively. ij1 is a recessive nuclear mutation that
produces albino (homoplastidic) and pale green (heteroplastidic)
stripes on an otherwise normal green leaf (Han et al.,
1992
). Chloroplasts affected in ij1 do not contain
ribosomes, largely lack thylakoids, and exhibit undetectable levels of
ribulose-biphosphate carboxylase and ATPase activity (Thompson
et al., 1983
). Pale-green or albino stripes of NCS2,
a maternally inherited defect, result from a deficiency of PSI
(Marienfeld and Newton, 1994
). In both of these variegated backgrounds, lls1 lesions formed only in normal
green tissues and failed to initiate or develop in either the pale
green or albino sectors (Fig. 2, E-G and I-K). Moreover,
lls1 lesions that formed in green tissues quickly stopped
expanding when they reached albino or pale-green sectors (Fig. 2, E, F,
I, and J). An exception to this trend, however, was noted when such
chlorophyll-deficient sectors were narrow. In these situations,
although the lls1 lesion still failed to annihilate the
albino tissue, it was able to traverse such narrow stripes and resume
growth in green tissue on the other side (Fig. 2G). The lack of trypan
blue staining in the traversed albino tissue indicates that the cells
therein are still alive (Fig. 2, I and J). Apparently, the signal(s)
mediating the propagation of lls1 cell death is somewhat
diffusible, but the fact that lls1 lesions fail to develop
or expand into nongreen tissue indicates that some activity related to
light harvesting or photosynthesis is important in expression of
lls1 lesions. That this is an lls1-specific phenomenon is indicated by the observation that Les4 lesions
are not suppressed in albino areas (Fig. 2H).
The interpretation that some factor or activity associated with light
harvesting by photosynthetic pigments is required for lls1
lesion development is further supported by the behavior of lls1 in the Oy1-700 background.
Oy1-700 is a semidominant mutation with a defect in
Mg-chelatase activity (Polacco and Walden, 1987
; Neuffer et al., 1997
). As a result, the mutant has
reduced chlorophyll levels, only 30% to 40% compared with normal
plants. In fact, chlorophyll b is largely absent in this
mutant. On leaves of lls1 mutants that are heterozygous for
Oy1-700, lesions initiated at a similar frequency (1.8 ± 1.5 lesions/unit area2) to those in wild-type
tissue (1.5 ± 1.6 lesions/unit area2).
However these lesions expanded at a greatly reduced rate than in normal
lls1 mutants (Fig. 2L). Even though lesions may eventually coalesce in older leaves of lls1/Oy1-700 double mutants,
plants often survive to maturity under field conditions, allowing
maintenance of lls1 mutants in homozygous conditions.
Death of lls1 Cells Is Mediated by Chloroplasts
To characterize cellular events that might be causally involved in
the death of lls1 cells, cells in and around freshly induced lesions were examined by electron microscopy. To make sure that cells
of similar age and developmental status were compared, lesions were
induced intentionally by puncturing leaves that had just acquired
developmental competence to form lls1 lesions. Mutant cells
from wound sites were compared with uninjured cells from the same leaf,
as well as with cells sampled from equivalent punctured and uninjured
sites of wild-type leaves. Although tissue was examined at 21 and
42 h post-wounding, only images collected at 21 h are shown.
This is because similar ultrastructural changes were found at both time
points, even though the lesions had progressed farther from the site of
wounding in the 42-h post-wounding tissue.
Both mesophyll and BS cells taken from intact sites of lls1
mutant leaves were almost indistinguishable from equivalent cells of
wild-type leaves. These leaf cells exhibited the typical dimorphic anatomy characteristic of C4 metabolism, meaning that the starchless, oval chloroplasts of mesophyll cells were highly granal, whereas the
starch-filled, cigar-shaped chloroplasts of BS cells were devoid of
grana (Figs. 3C and
4C). One difference that existed between
the mutant and wild-type cells was the number and size of starch grains
in chloroplasts of BS cells, both of which were significantly abated in
mutant cells (6.2 ± 3.7 granules
choroplast
1) compared with the wild type
(10.3 ± 3.3 granules choroplast
1;
P = 0.0023, n = 11 and 26 chloroplasts,
respectively).

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Figure 3.
Transmission electron microscopy of BS cell
chloroplasts and nuclei in injured and uninjured (21 h post-pinprick
wounding) wild-type and lls1 leaves. A, BS cell in uninjured
wild-type leaf tissue. B, BS cell adjoining dead cells in injured
wild-type leaf tissue. Asterisk indicates location of dead cell. C, BS
cell in uninjured lls1 tissue. D, BS cell adjoining dead
cell in injured lls1 leaf tissue. An increased amount of
heterochromatin (arrowhead) is present in the nucleus. Note also the
apparent folding of the thylakoid membranes (arrow). E, Nucleus of a BS
cell adjoining a dead cell in injured wild-type leaf tissue. Asterisk
indicates location of dead cell. Note the small amount of
heterochromatin. F, Nucleus of a BS cell adjoining a dead cell in
injured lls1 leaf tissue. A large amount of heterochromatin
is present in this nucleus (arrowheads). Bars = 1 µm. n,
Nucleus; Nu, nucleolus; C, chloroplast; S, starch granule; M,
mitochondrion; V, vacuole; R, rough endoplasmic reticulum; IS,
intercellular space.
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Very striking changes, however, were observed in cells when the mutant
leaf was wounded to incite the lls1 lesion. The most prominent of these changes was an alteration in the structure of
chloroplasts of mesophyll and BS cells alike, although the type of
change differed in the two cell types. Chloroplasts in mesophyll cells
adjacent to the wound-induced lls1 lesion were highly
swollen, whereas their thylakoid membranes possessed a relatively
normal organization (Fig. 4D). In contrast, chloroplasts of BS cells
adjacent to the wound were grossly distorted and their thylakoid
membranes appeared to have folded over upon themselves (Fig. 3D).
Chloroplasts of BS and mesophyll cells adjacent to the wound in
wild-type leaves displayed a relatively normal structure (Figs. 3B and
4B).

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Figure 4.
Transmission electron microscopy of mesophyll cell
chloroplasts and nuclei in injured and uninjured (21 h post-pinprick
wounding) wild-type and lls1 leaves. A, Mesophyll cell
chloroplasts in uninjured wild-type leaf tissue. B, Mesophyll cell
chloroplasts adjoining dead cells in injured wild-type leaf tissue. C,
Mesophyll cell chloroplasts in uninjured lls1 leaf tissue.
Chloroplasts exhibit granal stacking (not observed in Fig. 3C). D,
Mesophyll cell chloroplasts adjoining dead cells in injured
lls1 leaf tissue. Chloroplasts are dramatically swollen as
seen by the location of the chloroplast envelope (arrowheads).
The cytoplasm is vacuolated (asterisks), although endoplasmic
reticulum, mitochondria, and Golgi (arrows) appear normal in structure.
E, Portions of three mesophyll cells in injured lls1 leaf.
The chloroplasts in the cell closest to the injury (asterisk) are
greatly swollen. F, Fine detail of one of the chloroplasts in the
adjoining cell. No other ultrastructural alterations are apparent
in this cell except for the swelling visible on one of the cell's
chloroplasts (arrowhead). Bars = 1 µm. C, Chloroplast; S, starch
granule; M, mitochondrion; V, vacuole; R, rough endoplasmic reticulum;
G, Golgi apparatus; IS, intercellular space.
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A number of other fine structure changes were witnessed in mutant cells
from lls1 lesions, including an increase in and
marginalization of heterochromatin in BS nuclei, a frequently observed
hallmark of apoptosis in animals (Figs. 3, D and F). Some increase in
heterochromatin was also observed in mutant mesophyll cell nuclei, but
the increase was not as great as that observed in BS nuclei (data not
shown). The most common morphological change noted in plant PCD
studies, namely the presence of small cytoplasmic vacuoles in dying
cells, followed by cytoplasmic condensation (Bestwick et al.,
1997
; Kosslak et al., 1997
; Mittler et
al., 1997
; Partington et al., 1999
; Wang et al., 1999
) was observed in mesophyll cells. In addition, the central vacuole seemed to have disappeared in all cells adjacent to
pinprick wounds, suggesting that tonoplast collapse (Jones, 2001
) may also be a feature of cell death in lls1 plants.
Extensive examination of sections taken from lls1 plants
indicated that although cellular alterations discussed in the preceding paragraph do eventually emerge in all cells within lls1
lesions, they occur relatively late in the sequence of events leading
to cell death. In contrast, change in chloroplast structure was not only the most conspicuous, but also the first to manifest in
lls1 cells. As demonstrated in Figure 4, A and B, for
mesophyll cells, swelling of the chloroplast envelope initiates well
ahead of the lesion front. A similar gradient of events was witnessed
with chloroplasts of mutant BS cells (data not shown). Intriguingly, mitochondria, the organelle that seems to integrate most apoptotic cell
deaths in animals, maintain a normal structure even in cells displaying
dramatically altered chloroplast structure (Figs. 3D and 4D; data not
shown). Likewise, integrity of Golgi and endoplasmic reticulum remains
unaffected in dying lls1 cells. A number of other hallmarks
of apoptosis that are not witnessed in dying lls1 cells
include blebbing of membranes and fragmentation of cells into vesicles
(apoptotic bodies). These observations suggest that lls1
cells collapse because of a cell death process other than apoptosis.
The LLS1 Gene Is Expressed in Photosynthetic Tissues
The suppression of the lls1 phenotype in
non-photosynthetic tissues suggests that the product of the
Lls1 gene may only be required in photosynthetic tissues. We
examined various maize tissues for the presence of the Lls1
transcript. First, we determined by Southern blot that the
Lls1 gene is a single-copy gene in maize as evidenced by the
detection of a DNA fingerprint that is explicable by the sequence of
the cloned B73 Lls1 gene alone (Fig.
5, A and B). Southern blots washed at low
stringencies did not reveal any other significant cross-hybridizing
bands, so we could use the Lls1 cDNA as a unique probe for
northern analysis. The Lls1 message was almost undetectable
in leaves when total RNA was used for northern-blot analysis (data not
shown). However, using enriched poly(A+) mRNA the
Lls1 transcript was readily detectable in young and old
leaves of a mature B73 plant (Fig. 5D) and a low level of transcript
was also detectable in the leaf sheath of plants. However, we did not
detect the Lls1 message in any non-photosynthetic tissues including young tassels, silks, ear tissue, and roots. Thus, we conclude that expression of the Lls1 gene occurs mainly in
the photosynthetic tissues that were demonstrated to be prone to lesion formation in mutant plants.

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Figure 5.
The Lls1 gene is a single-copy gene and
the Lls1 transcript is expressed in photosynthetic tissues.
A, Southern-blot analysis. Maize B73 DNA was digested with the
indicated enzymes, blotted, and probed with an Lls1 cDNA
probe. Most lanes exhibit a single band and those with multiple bands
are explicable by multiple restriction sites in the B73 structural
gene. Size standards are indicated in kb. B, Gene structure of the
maize Lls1 gene. The intron/exon structure of the
Lls1 gene was determined by comparing the sequence of the
B73 genomic sequence with an Lls1 cDNA sequence. Blocks
indicate exons. Restriction sites: RI, EcoRI; HIII,
HindIII; PI, PstI; and SI, SalI. C,
Poly(A+)-enriched RNA from the various maize
tissues was subjected to northern analysis using maize Lls1
cDNA as probe. One microgram of poly(A+) RNA was
loaded per lane except for root tissue, which was deliberately
overloaded. Picture of ethidium bromide-stained gel shows near equal
loading of samples from indicated tissues of a mature 13-leaf B73
plant. D, Northern blot showing that a unique lls1
transcript is detectable in fully photosynthetic green leaves and at a
lower level in leaf sheath but not in other tissues. E, To normalize
RNA loading, the blot was stripped and rehybridized with a maize actin
probe. This experiment was repeated twice with similar results.
|
|
LLS1 Is Most Closely Related to Other Chloroplast and
Cyanobacterial Proteins Containing Non-Heme Iron-Binding
Motifs
Examination of the LLS1 amino acid sequence and that of its
Arabidopsis ortholog ACD1 (J. Gray, unpublished data) reveals that even
though these proteins have high 72% overall amino acid identity, they
exhibit weak homology at the amino terminus (Fig. 6A). However, using the algorithm ChloroP
algorithm (Emanuelsson et al., 1999
), both of these
proteins are predicted to contain a conserved chloroplast
transit-peptide cleavage site (Fig. 6A), suggesting that these proteins
are targeted to the chloroplast.

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Figure 6.
Predictive targeting of LLS1 to chloroplast and
phylogenetic comparison of LLS1 with non-heme Fe-binding proteins from
bacteria and plants. A, Alignment of amino termini of LLS1 and ACD1
proteins shows low conservation of sequence in this region. Arrow
indicates the conserved cleavage site for a chloroplast transit peptide
as predicted using the ChloroP algorithm. B, Cladogram of consensus
tree obtained from maximal parsimony bootstrap analysis using the
indicated proteins as operational taxonomic units. The consensus tree
reconstructs the evolutionary relationship between LLS1 and other
non-heme Fe-binding proteins. The proteins are labeled by species name
or bacterial strain number in which they are found (for accession nos.
and biocomputational methods, see "Materials and Methods"). Clades
of related proteins are color shaded as follows: red, LLS1 and
LLS1-like homologs in various plants and cyanobacteria; black,
bacterial ring hydroxylating enzymes; purple, plant choline
monooxygenase (CMO) enzymes; green, plant and cyanobacterial
chlorophyll a oxygenase CAO enzymes; blue, pea (Pisum
sativum) TIC55 Rieske Fe-sulfur protein putatively associated with
transport through inner chloroplast membrane and related plant
proteins.
|
|
The LLS1/ACD1 proteins contain two conserved functional motifs, a
Rieske Fe-sulfur coordinating center and a non-heme mononuclear Fe-binding site. Previously, we identified these motifs only in bacterial aromatic ring-hydroxylating dioxygenases, which catalyze the
opening of a phenolic ring (Gray et al., 1997
). A survey
of the complete Arabidopsis genome indicates that there are a total of
five Arabidopsis proteins that contain the same two motifs and four of
these plant genes have now been cloned and studied. In addition to
ACD1, these genes include Cmo (choline monooxygenase), involved in the production of the osmoprotectant betaine
(Rathinasabapathi et al., 1997
); Cao
(chlorophyll a oxygenase), involved in the conversion of
chlorophyll a to chlorophyll b (Tanaka et
al., 1998
); and Tic55, which codes for a 55-kD
product suspected to be involved in the translocation of proteins to
the inner chloroplast membrane (Caliebe et al., 1997
).
The last is an lls1-like gene on chromosome 4 (see below).
Because CMO and CAO are definitely not involved in phenolic metabolism,
questions can be raised as to whether the function of LLS1 would be to
degrade a phenolic substrate. A phylogenetic comparison between these
proteins indicates that the LLS1 protein is not a clear homolog of any
of these plant proteins (Fig. 6B). In Arabidopsis, there are genes more
homologous to CMO and CAO and these are distinct from the
Lls1 ortholog Acd1 (Fig. 6B; J. Gray and S. Reinbothe, unpublished data). In rice (Oryza sativa) and
Arabidopsis, we have identified another gene (lls1-like)
that is more closely related to Lls1 than Cao,
Cmo, or Tic55. The LLS1-LLS1-like clade also
contains several open reading frames from the cyanobacteria
Synechocystis sp. PCC 6803 and Anabaena
sp. PCC 7120, which have as yet unidentified functions. Only two
bacterial phenolic dioxygenases are included in this analysis and these
clustered in the CMO clade. Other bacterial dioxygenases proved to be
more distantly related than any of the proteins included here and were
omitted from this cladogram. Our earlier study indicated that the
relationship between LLS1 and these bacterial phenolic dioxygenases is
strictly limited to the regions containing the Fe-binding motifs
(Gray et al., 1997
).
The LLS1-LLS1-like clade appears to be phylogenetically equidistant
from the CMO, CAO, and TIC55 clades, suggesting that in plants these
two Fe-binding motifs have been recruited toward diverse metabolic
functions. Another important feature of this analysis is that of all of
the plant proteins known to possess these particular motifs (CAO, CMO,
and TIC55) are known to be localized to the chloroplast or they are
closely related to genes found in cyanobacteria
which in turn are
related to the ancestral chloroplast endosymbiont. Together, these
observations lend support to the proposition that LLS1 evolved to
provide its positive homeostatic function within the chloroplast.
 |
DISCUSSION |
Previous studies on lls1 demonstrated that the
developmentally specified phenotype of this mutation results from a
cell death program that manifests intracellularly in a cell-autonomous
manner (Johal et al., 1995
; Gray et al.,
1997
; Simmons et al., 1998
). The work presented
here provides insights into factors and mechanisms that mediate the
initiation and propagation of lls1 lesions and the nature of
cellular events that result in the demise of an lls1 cell.
Loss of Chloroplast Structural Integrity Is a Key
Event in lls1 Cell Death
A key finding of this study is that the loss of structural
integrity of chloroplasts is the most conspicuous feature of dying lls1 cells, and the swelling of this organelle appears to be
the first discernible structural event that takes place in mesophyll cells before they die. Chloroplast swelling reflects the loss of
differential permeability of its envelope membranes and may result from
changes occurring within the chloroplast such as photooxidation, a
change in pH, or a loss of energy production (Wise and Cook, 1998
; Mostowska, 1999
). An intriguing difference
was noticed in the way lls1 affected chloroplasts of the two
cell types of the maize leaf. Although grossly disorganized, there was
less evidence of chloroplast swelling in the BS cells of
lls1 leaves. This may be because of the differential
sensitivities of the chloroplast types to ROS or a differential ability
of the BS chloroplasts to produce ROS because they lack the
oxygen-generating PSII found in mesophyll chloroplasts (Pfuendel
and Meister, 1996
; Kingston-Smith and Foyer,
2000
). Lower ROS production could result in less damage to BS
cells and this could explain why the autocatalytic spread of
lls1 lesions is retarded near vascular elements.
In animals, mitochondrial membrane changes resulting in mitochondrial
swelling have been noted in apoptotic cells that aid the generation of
ROS and in the release of a number of apoptogenic factors (such as
cytochrome c and apoptosis-inducing factor) from the intermembrane
space of mitochondria to the cytosol (Hengartner, 2000
;
Simon et al., 2000
; Von Ahsen et al.,
2000
). It is tempting to think that similar cell death
promoting factors may be released in a parallel fashion from
chloroplasts although so far none have been identified. Distortion of
the chloroplast has been reported in other plant cell deaths
(Mou et al., 2000
), but the timing of such change has
not been established and it may be a late event. In this study,
however, we document that this change is an early and apparently causal
event in the cell death process.
LLS1 Suppresses Spread of Cell Death Initiated by Multiple Biotic
and Abiotic Factors
We found that lls1 lesions can be triggered by
cellular damage inflicted by a number of agents such as pathogen
ingress, physical wounding, and metabolic disorder caused by another
genetic lesion. The convergence of multiple triggers, inducing
lls1 cell death, might be explained if lls1 cells
are predisposed to damage because a cell compartment such as the
chloroplast is already compromised and sensitized toward a common cell
death mediator. One class of candidates that fits well in this role are
ROS, which are known to act as partly diffusible stress signals during
diverse provocations in plants, including HR, lesion mimicry, and
wounding (Hippeli et al., 1999
; Jabs,
1999
; Kliebenstein et al., 1999
; Mittler
et al., 1999
; Heath, 2000
). For example,
loss-of-function mutations of the Arabidopsis Lsd1 fail to
up-regulate superoxide dismutases in response to salicylic acid
signaling. Failure to detoxify accumulating superoxide gives rise to
propagative lesions similar to the maize lls1 mutation
(Kliebenstein et al., 1999
). In contrast to
lls1, however, lsd1 lesions cannot be induced by
mechanical wounding, indicating different modes of location or
operation for the gene products. It may be that LLS1, like LSD1, is
also suppressing the production or action of ROS but it may operate
more directly and in a specific cell compartment such as the chloroplast.
Propagation of Cell Death in lls1 Lesions Is Light
Dependent
Although a cellular injury is required for initiation of an
lls1 lesion, its enlargement exclusively depends on the
availability of light. The data with light filters and albino-sectored
plants indicate that only light above a certain fluence rate that is captured by green photosynthetic tissue is driving the expression of
lls1 lesions. Light is known to exacerbate cell death in
plants and this has been documented in the case of HR, in many lesion mimic mutations (below), in barley (Hordeum vulgare)
aleurone cells, and in fumonisin-induced cell death in Arabidopsis
(Jabs et al., 1996
; Hu et al., 1998
;
Mock et al., 1998
; Shirasu and Schulze-Lefert,
2000
; Stone et al., 2000
; Mach et al.,
2001
). One way that cell death is promoted is through the
production of free radicals by light (Hippeli et al.,
1999
; Jabs, 1999
). For instance, in the case of
Les22 plants, the production of excess porphyrin free
radicals is the precipitating cause of cell death (Hu et al.,
1998
; Mock et al., 1998
). Similarly, in
acd2 plants, it is the photo-activation of the red
chlorophyll catabolite that triggers free radical production and
subsequent cell death (Mach et al., 2001
). The fact that
lls1 lesions do not develop in cells lacking chlorophyll is
consistent with the idea that death of lls1 cells occurs in
a similar fashion. The inability to remove photo-activatable
chlorophyll intermediates could explain the developmentally regulated
and wound-induced formation of lesions only in green tissue. Support
for this interpretation is also reflected in the reduction of the
lls1 phenotype in chlorophyll-deficient lls1/Oy
and lls1/ij double mutants. Inability to remove
photo-activated pigments could also result in the autocatalytic
production of ROS and such an event is compatible with the observation
that the signal causing propagation of lls1 lesions is
somewhat diffusible (Johal et al., 1995
; Dangl et
al., 1996
).
LLS1 Is Most Closely Related to Chloroplast and Cyanobacterial
Proteins
Because chloroplast structural alterations appear to be an early
feature of lls1 cell death, it is likely that chloroplasts are the primary site of action of LLS1. The fact that we could detect
the Lls1 transcript only in photosynthetic tissue supports this proposition. We also found that the LLS1 protein and the dicot
ortholog from Arabidopsis (ACD1) are both predicted to contain a
conserved chloroplast transit peptide cleavage site. The LLS1 gene
itself is highly conserved in all plant species examined thus far and
the LLS1 protein is closely related to four other plant proteins that
are known to function in the chloroplast. None of these are known to be
involved in phenolic metabolism, which weakens our original hypothesis
that LLS1 might remove a phototoxic phenolic compound (Gray et
al., 1997
). An alternative possibility is that LLS1 catalyzes
the removal of another photosensitive metabolite (chlorophyll?) or
regulates such a process by virtue of the redox-sensing Fe-binding
motifs that it contains. Our phylogenetic comparison suggests that the
LLS1-related plant proteins have been recruited toward diverse
metabolic functions but these functions appear restricted to the
chloroplast compartment and may have evolved from ancestral
endosymbiont genes.
 |
CONCLUSION |
In conclusion, we present evidence to show that LLS1 functions in
plants to protect the integrity of the chloroplast compartment after
biotic or abiotic stress. In the absence of this protective function,
light energy is used directly or indirectly to produce a cell death
mediator (possibly ROS or a phototoxic chlorophyll intermediate) that
damages the chloroplast. Chloroplast destabilization then plays a
central role in precipitating propagative cell death because leakage of
these cell death mediators triggers death in neighboring photosynthetic
cells. The protective function of LLS1 may have evolved in ancestral
cyanobacteria and is conserved now in all photosynthetic organisms. We
believe that whether or not chloroplast dysfunction is regulated during
PCD events, it will be a useful model for reexamining other forms of
rapid cell death in plants, particularly those that occur in
photosynthetic tissue.
 |
MATERIALS AND METHODS |
Plant Material
The reference allele for lls1 was obtained from
the Maize Genetics Cooperation Stock Center (University of Illinois,
Urbana-Champaign). The NCS2 mutation was provided by Kathy J. Newton (University of Missouri, Columbia). The
oy-700 mutation was provided by Gerald Neuffer
(University of Missouri, Columbia). The ij mutation was provided by Edward Coe Jr. (U.S. Department of Agriculture,
University of Missouri, Columbia).
Histochemistry and Autofluorescence Microscopy
Leaves for callose studies were prepared for examination
according to the method of Eschrich and Currier (1964)
.
Leaf pieces were mounted in Moviol and examined using UV
epifluorescence (excitation filter, 365 nm; dichroic mirror, 395 nm;
and barrier filter, 420 nm). Captured images were color enhanced using
Adobe Photoshop (Adobe Systems, San Jose, CA). Whole leaf pieces
were examined directly for blue light autofluorescence using a standard
fluorescein isothiocyanate filter set (excitation filter,
450-490 nm; dichroic mirror, 505 nm; and barrier filter, 520 nm).
Trypan blue staining was performed on fresh leaf sections as described
by Yin et al. (2000)
, except that we stained and then
destained for 12 h.
Electron Microscopy
The seventh leaves of 4-week-old wild-type
(Lls1/Lls1 or
Lls1/lls1) and homozygous
lls1 plants were wounded via pinpricking on one side of
the mid-rib. At 21 and 42 h, leaf tissue was excised at the wound
and, for uninjured tissue, on the opposite side of the mid-rib. Two
wild-type and two lls1 plants were examined at both time
points. Tissue was excised under and fixed in 2.5% (v/v) glutaraldehyde in 100 mM sodium cacodylate buffer (pH 6.9)
for 2.5 h at 4°C. Tissue samples were postfixed for 2 h in
1% (w/v) OsO4 and 100 mM sodium
cacodylate buffer (pH 6.9). The tissues were then stained en bloc in
2% (w/v) aqueous uranyl acetate for 1 h, washed in
deionized, distilled water, and dehydrated through an ethanol series.
After infiltration through a graded propylene oxide/Spurr's epoxy
resin series, the tissues were embedded in 100% (w/v) Spurr's
epoxy resin and polymerized at 60°C for 24 h. Ultrathin sections
were prepared using a diamond knife on an 8800 Ultratome III (LKB
Instruments, Inc., Gaithersburg, MD), and stained with uranyl acetate
and lead citrate. The stained sections were examined on a JEM-1200EX
transmission electron microscope (JEOL, Ltd., Akishima, Japan). Images
were recorded on 4489 film (Eastman-Kodak, Rochester, NY). The
statistical significance of variations in the number of starch granules
per chloroplast was performed by applying a Student t
test analysis (two tailed, unpaired) on 11 mutant and 26 normal
chloroplasts images, respectively.
Southern- and Northern-Blot Analyses
DNA was isolated from B73 maize (Zea mays) leaf
tissue using a cetyltrimethylammoniumbromide-based method
(Hulbert and Bennetzen, 1991
). Southern-blot analysis
was performed essentially as described by Gardiner et al.
(1993)
and the blot hybridized using a partial Lls1 cDNA clone (pJG200) as a probe. Tissue for RNA
isolation was frozen in liquid nitrogen, ground to a fine powder, and
added to premeasured denaturation and extraction solution (2.0 M guanidine thiocyanate, 0.6 M ammonium
thiocyanate, 0.2 M sodium acetate [from 2 M
stock, pH 4.0], 8% [w/v] glycerol, and 50% [w/v]
phenol [water saturated, pH 4.3 ± 0.3]). Samples were vortexed
and organic phase separation was effected by the addition of 0.2 volumes of chloroform per volume of extraction solution employed. RNA
was isopropanol precipitated from the aqueous phase, washed with 70% (w/v) ethanol, and resuspended in RNAase-free water.
Poly(A+)-enriched RNA was isolated from total RNA samples
using oligo(dT)-cellulose [MicroPoly(A) Pure Kit, Ambion, Austin,
TX]. RNA samples were subjected to northern-blot analysis using a 50%
(w/v) formamide hybridization solution (Ausubel et al.,
1994
). The same cDNA probe as above was used to detect
the maize lls1 transcript.
Analysis of Light Requirement for lls1 Lesion
Development
To determine the spectral range of light required for lesion
formation, sections of leaves were clamped between 0.125-inch plexiglas
GM filters held in place by a metal stand with a side arm
clamp. The following transparent filters were used: plexiglas GM 2,423 (red), 2,711 (far red), 2,424 (blue), 2,092 (green), 2,208 (yellow), and 2,422 (amber) or clear (Cope Plastics Inc., St.
Louis). Transmission spectra of filters were determined by examining
small sections of filters in a spectrophotometer. Leaf sections of
greenhouse or field-grown plants were covered in aluminum foil to
completely reflect incident light. After complete lesioning of a leaf,
filters were removed to observe if lesioning had occurred in the
covered region. For the estimations of lesion densities in
lls1, Les, and Oy/+
leaves, the leaves were photographed side by side and lesion density
expressed per unit area2 of these photographs. The numbers
of lesions were counted in equivalent regions along the length of
lesioned leaves or similar developmental age and averaged.
Biocomputational Methods and Data Sources
The amino acid sequences of 28 listed enzymes (below) were
predicted from available GenBank files. The neighborhood search algorithm BLAST (Altschul et al., 1990
) was employed for
database searches using the World Wide Web BLAST servers of the
National Center for Biotechnology Information and The Arabidopsis
Information Resource. In addition, rice (Oryza sativa)
genomic sequences were retrieved from the Rice Genome Database
(http://210.83.138.53/rice/) and from the Syngenta Torrey Mesa Research
Institute rice genome project (http://portal.tmri.org/rice/). The
ChloroP (Emanuelsson et al., 1999
) algorithm was
employed to predict the cellular localization of proteins. The entire
proteins were aligned using with the ClustalV method with PAM250
residue weights within the MegAlign program (DNAStar, Madison, WI).
Unrooted cladograms were generated by using the PAUP 4.0b10 program
(Swofford, 2001
). The bootstrap method was
performed for 100 replicates with a maximum parsimony criterion. All
characters were weighted equally. Starting trees were obtained by
random stepwise addition and the tree-bisection-reconnection algorithm
was used for branch swapping.
Accession Numbers
Accession numbers used for the
CMO (choline monooxygenase) clade are as
follows: Arabidopsis CMO precursor, T08550; spinach (Spinacia
oleracea) CMO, T09214; beet (Beta vulgaris) CMO
precursor, T14542; and rice CMO, AAAA00000000 (contig no. 180).
Accession numbers used for the CAO (chlorophyll a
oxygenase, chlorophyll b synthase) clade are as
follows: Arabidopsis CAO (Arabidopsis), AAD54323; rice CAO,
AAAA00000000 (contig no. 19995; Yu et al., 2002
),
AC087599, D48708, BAA82479, and AB021310; Dunaliella
salina CAO, BAA82481; Chlamydomonas reinhardii CAO, BAA33964; liverwort (Marchantia polymorpha) CAO,
BAA82480; Prochloron didemni CAO, BAA82483; and
Prochlorothrix hollandica CAO, BAA82482. Accession
numbers used for the LLs1 and LLs1-like
clade are as follows: maize LLS1 lethal leaf-spot 1, U77346 (genomic clone pJG201) and AAC49676 (partial cDNA clone pJG200;
Gray et al., 1997
); Arabidopsis ACD1 accelerated cell death 1 (Lls1 ortholog), AL391254, protein
identification CAC03538.1; Rice LLS1 homolog, AAAA00000000 (contig no. 6404 and Syngenta contig no. CLB11460.2, http://portal.tmri.org/rice/; Goff et al., 2002
); Medicago truncatula
LLS1 homolog, contig of overlapping expressed sequence tags
AW257191, BE248884, BE249137, BF005787, BF633506, BF634038, BF634446, BF636009, and BF642558; Arabidopsis LLS1-like gene L73G19.30, AL050400;
Anabaena sp. alr4354 LLs1-like homolog
(Nostoc sp. PCC 7120), NP 488394;
Anabaena sp. alr7348 LLs1-like homolog
(Nostoc sp. PCC 7120), NP 490454;
Anabaena sp. alr2097 LLs1-like homolog (Nostoc sp. PCC 7120), NP 486137; and
Anabaena sp. alr5007 LLs1-like homolog
(Nostoc sp. PCC 7120), NP 489047. Accession numbers used for the Tic55 clade are as follows: pea (Pisum
sativum) TIC55 (55-kD Rieske [2Fe-2S] Fe-sulfur protein
putatively associated with transport through inner chloroplast
membrane), AC006585; Arabidopsis TIC55 homolog, AC006585 and contig of
overlapping expressed sequence tags AI995341, AV439633,
AV442063, BE038210, BE528579, and protein identification AAD23030.1; and rice TIC55 homolog, AAAA00000000 (contig no. 29820). Accession numbers used for other sequences are as follows: G7 NahAc naphthalene 1,2-dioxygenase Fe-sulfur oxygenase component large chain,
Pseudomonas putida (strain G7), JN0644; 9816-4 NahAc
naphthalene dioxygenase ISP alpha subunit (Pseudomonas
sp.), AAA92141; Synechocystis sp. PCC6803 slr1747
hypothetical protein, BAA17786.1; and Synechocystis sp.
PCC6803 sll1869 hypothetical protein putative
3-chlorobenzoate-3,4-dioxygenase, BAA18227.
Distribution of Materials
Upon request, all novel materials described in this publication
will be made available in a timely manner for noncommercial research
purposes, subject to the requisite permission from any third party
owners of all or parts of the material. Obtaining any permissions will
be the responsibility of the requestor.
All electron microscopy work was carried out at the Electron
Microscopy Core Facility (University of Missouri, Columbia). The
authors wish to acknowledge Cheryl Jensen (Electron Microscopy Core Facility) for thin sectioning all samples used in the study. The
electron microscopy work described in this manuscript was carried out
by D.J.-B. and B.B. while they were on sabbatical leave in the
laboratory of G.S.J. in the Department of Agronomy at the University of
Missouri (Columbia). The authors thank Stephen Goldman (University of
Toledo, Plant Science Growth Center) for the use of facilities used for
some of the analysis in this research. We thank Yang Manli (University
of Toledo) for technical assistance in microscopic analysis.
Received May 13, 2002; returned for revision June 25, 2002; accepted August 30, 2002.
Article, publication date, and citation information can be found at
www.plantphysiol.org/cgi/doi/10.1104/pp.008441.