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Plant Physiol, September 2001, Vol. 127, pp. 58-66
Analysis of the Ethylene Response in the
epinastic Mutant of Tomato1
Cornelius S.
Barry,2
Elizabeth A.
Fox,2
Hsiao-ching
Yen,
Sanghyeob
Lee,
Tie-jin
Ying,
Donald
Grierson, and
James J.
Giovannoni*
Boyce Thompson Institute for Plant Research, Tower Road, Ithaca,
New York 14853 (C.S.B., E.A.F., J.J.G.); Department of Horticultural
Sciences, Texas A&M University, College Station, Texas 77843-2133
(H.-c.Y., S.L., J.J.G.); Plant Science Division, School of Biosciences,
University of Nottingham, Sutton Bonington Campus, Loughborough LE12
5RD, United Kingdom (T.-j.Y., D.G.); and United States Department of
Agriculture-Agricultural Research Service Plant, Soil, and Nutrition
Laboratory, Tower Road, Ithaca, New York 14853 (J.J.G.)
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ABSTRACT |
Ethylene can alter plant morphology due to its effect on cell
expansion. The most widely documented example of ethylene-mediated cell
expansion is promotion of the "triple response" of seedlings grown
in the dark in ethylene. Roots and hypocotyls become shorter and
thickened compared with controls due to a reorientation of cell
expansion, and curvature of the apical hook is more pronounced. The
epinastic (epi) mutant of tomato
(Lycopersicon esculentum) has a dark-grown seedling
phenotype similar to the triple response even in the absence of
ethylene. In addition, in adult plants both the leaves and the petioles
display epinastic curvature and there is constitutive expression of an
ethylene-inducible chitinase gene. However, petal senescence and
abscission and fruit ripening are all normal in epi. A
double mutant
(epi/epi;Nr/Nr)
homozygous for both the recessive epi and dominant
ethylene-insensitive Never-ripe loci has the same
dark-grown seedling and vegetative phenotypes as epi but
possesses the senescence and ripening characteristics of
Never-ripe. These data suggest that a subset of ethylene
responses controlling vegetative growth and development may be
constitutively activated in epi. In addition, the
epi locus has been placed on the tomato RFLP map on the
long arm of chromosome 4 and does not demonstrate linkage to reported
tomato CTR1 homologs.
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INTRODUCTION |
The gaseous plant hormone ethylene
participates in the regulation of many developmental processes
throughout the life cycle of plants (Abeles et al., 1992 ). The growth
and expansion of cells is just one area where ethylene has been shown
to have an influence. The most widely documented example of the effect
of ethylene on cell expansion is the triple-response phenotype
exhibited by dicot seedlings grown in the dark in the presence of
ethylene. In the absence of ethylene, dark-grown seedlings have an
etiolated morphology consisting of an elongated, slender root and
hypocotyl with the development of a hypocotyl hook. In the presence of
ethylene, seedlings develop a short, thickened root and hypocotyl with
enhanced curvature of the apical hook due to ethylene inhibition of
cell elongation (Guzman and Ecker, 1990 ). In contrast, in deepwater rice and other semiaquatic plants, ethylene acting in conjunction with
gibberellins has been shown to stimulate internode cell elongation (Kende et al., 1998 ).
The triple response phenotype has been used extremely successfully as a
screen for the isolation of components of the ethylene signal
transduction pathway in Arabidopsis. Mutants found to be insensitive to
ethylene display a normal etiolated phenotype in response to the gas,
whereas a constitutive triple response (ctr) mutant was also
identified that showed the triple response phenotype in the absence of
ethylene (Guzman and Ecker, 1990 ). A combination of molecular and
genetic approaches has elucidated the identities of a number of the
components of the pathway and the order in which they act (for review,
see Chang and Shockey 1999 ; Stepanova and Ecker, 2000 ). Briefly,
ethylene is perceived by a family of integral membrane receptors with
similarity to two-component His kinases and function as negative
regulators. The CTR1 gene is also a negative regulator of
the pathway acting downstream of the receptors and encodes a protein
with similarity to the Raf family of Ser/Thr protein kinases (Kieber et
al., 1993 ). CTR1 may interact directly with the receptors
(Clark et al., 1998 ) and has been proposed to represent the head of a
putative mitogen-activated protein kinase cascade (Chang and Shockey
1999 ). The signaling events from CTR1 to the nucleus are unclear but
appear to involve EIN2, a novel integral membrane protein with
homology to mammalian natural resistance-associated macrophage
protein metal ion transporters (Alonso et al., 1999 ). Ethylene
signaling in the nucleus is mediated by the EIN3 family of
transcriptional regulators, which act directly upon ethylene response
factors to activate ethylene-inducible gene expression (Chao et al.,
1997 ; Solano et al., 1998 ). Based upon homology to the Arabidopsis
model, a number of components of the ethylene response pathway have now
been isolated from tomato (Lycopersicon esculentum),
including receptors (Lashbrook et al., 1998 ; Tieman and Klee, 1999 ) and
CTR-like genes (Lin et al., 1998 ; Zegzouti et al., 1999 ;
L.C. Adams and J.J. Giovannoni, unpublished data). Furthermore,
utilization of the same triple response screen used in Arabidopsis led
to the discovery that the tomato fruit-ripening mutant
Never-ripe (Nr) was insensitive to ethylene
(Lanahan et al., 1994 ). Additionally, the delayed petal senescence,
flower abscission, and fruit-ripening phenotypes of Nr were
also shown to be the result of ethylene insensitivity. Wilkinson et al.
(1995) showed that Nr was caused by a mutation in a member
of the tomato ethylene receptor gene family (Wilkinson et al.,
1995 ).
The epinastic (epi) mutant of tomato displays
characteristics indicative of altered cell expansion similar to
wild-type plants treated with ethylene. For example, the stems and
petioles are thicker than in wild-type plants and petioles display
epinastic curvature. Leaves also have a twisted epinastic morphology,
and ethylene production is increased above the level of wild-type plants (Fujino et al., 1988 ). Dark-grown epi/epi
seedlings show characteristics of the triple-response phenotype, as
indicated by a shortening and thickening of the hypocotyl, and
therefore resemble wild-type seedlings treated with ethylene (Fujino et al., 1989 ). Furthermore, inhibitors of ethylene synthesis and action
were unable to rescue the epi phenotype, leading to the suggestion that the mutation may result in a constitutive ethylene response. This hypothesis is supported by the similarity of the epi seedling phenotype to that of the Arabidopsis ctr1
mutant seedling, the phenotype of which also does not revert when grown on ethylene inhibitors (Kieber et al., 1993 ). We have investigated the
putative constitutive ethylene response of epi with the aid of a double mutant, including the ethylene-insensitive Nr
allele (epi/epi;Nr/Nr). Our
results indicate that, unlike the ctr1 mutant of
Arabidopsis, epi does not demonstrate a global constitutive ethylene response. Alternative models are proposed that suggest a role
for epi either in the regulation of a subset of ethylene responses regulating cell expansion or in an independent pathway required for normal growth that cross-talks with the ethylene response pathway.
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RESULTS |
The epi Phenotype and the Relationship with
Ethylene
The vegetative phenotypes of Ailsa Craig (AC; nr/nr;
normal nearly isogenic control for the dominant
Nr/Nr mutant), VFN8 (Epi/Epi; normal nearly isogenic control for the recessive
epi/epi mutant), Nr/Nr,
epi/epi, and the
epi/epi;Nr/Nr double mutant are shown in Figure 1A. AC, VFN8, and
Nr/Nr displayed normal vegetative growth, whereas
epi/epi showed the characteristic stunted growth and twisted leaf morphology. The epi-like phenotype was also
shown by the epi/epi;Nr/Nr double
mutant. The senescence and abscission of petals from normal wild-type
tomato flowers occur within a few days of anthesis and are enhanced by
successful pollination (Llop-Tous et al., 2000 ). These processes have
been shown to be mediated by ethylene, as both are greatly delayed in
the ethylene-insensitive Nr mutant, with petals remaining
attached to the developing fruit long after fertilization has occurred
(Lanahan et al., 1994 ; Llop-Tous et al., 2000 ). Petals of
epi/epi flowers had the same rate of senescence
as those of wild-type plants (data not shown), whereas those of
double-mutant plants clearly showed the same delayed petal senescence
phenotype that is characteristic of Nr (Fig. 1B). The
ripening of fruit was also the same in double mutant and Nr
plants (Fig. 1C). Although epi/epi fruit ripened
normally when compared with VFN8 and AC, both
Nr/Nr and
epi/epi;Nr/Nr fruit remained firm and
accumulated less lycopene.

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Figure 1.
Phenotypes of the
epiepi;Nr/Nr double mutant. A,
Vegetative growth; note the epinastic growth of double-mutant plants
(genotypes from left to right are as follows: AC
[nr/nr], Nr/Nr, VFN8
[Epi/Epi], epi/epi, and
epi/epi;Nr/Nr). B, Delayed petal
senescence and abscission in
epi/epi;Nr/Nr plants; note epinastic
curvature of leaves. C, Fruit ripening is impaired in the double
mutant. Genotypes are indicated as follows: a, AC (nr/nr);
b, Nr/Nr; c, VFN8
(Epi/Epi); d, (epi/epi); and e,
epi/epi;Nr/Nr. All fruit were of
equivalent age and were harvested when normal ripening lines reached
the red ripe stage. The difference in fruit locule number is due to
cultivar differences. Fruit of AC typically have two locules, whereas
those of the VFN8 cultivar are multilocular.
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Other than the obvious effects on vegetative growth, phenotypes
commonly associated with an altered ethylene response remained unaltered in the epi/epi mutant. No differences
in leaf and petal senescence or abscission were observed, and both the
rate of fruit ripening and the time from anthesis to the onset of
ripening remained the same for both genotypes. Small increases in the
transcript abundance of the ethylene-regulated genes E8,
PG, and PSY1 were observed in epi
fruit compared with those of VFN8 throughout ripening. This was
probably due to the small increase in ethylene synthesis observed in
epi fruit during ripening (data not shown).
The phenotypes of dark-grown seedlings of single and double mutants
grown in the presence or absence of
1-aminocyclopropane-1-carboxylic acid (ACC) are shown in Figure
2A. As previously described (Fujino et
al., 1989 ) dark-grown epi seedling hypocotyls showed reduced elongation and enhanced swelling even in the absence of ACC.
epi/epi;Nr/Nr seedlings showed the
same phenotype as the epi/epi parent. Growth on
20 µM ACC caused dramatic hypocotyl shortening
and swelling in the AC and VFN8 cultivars and in
epi/epi. The growth inhibition effect of ACC was
reduced in Nr/Nr and double-mutant seedlings. The
effect of the ethylene action inhibitor 1-MCP on seedling growth on ACC
is shown in Figure 2B. 1-MCP alleviated the effect of ACC on all of the
genotypes but did not revert epi or the double mutant.

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Figure 2.
Effect of ACC and 1-methylcyclopropene on
the dark-grown seedling phenotype of epi. Seedlings were
grown as described in "Materials and Methods" and were photographed
2 weeks after sowing. Genotypes are indicated as follows: a, AC
(nr/nr); b, Nr/Nr; c, VFN8
(Epi/Epi); d, (epi/epi); and e,
epi/epi;Nr/Nr. A, Seedlings grown in
absence of ACC (top); note shortening and thickening of
epi/epi and double-mutant hypocotyls. Bottom,
Seedlings grown in 20 µM ACC; note further
reduction in epi/epi elongation but reduced
inhibition in Nr and double-mutant seedlings. B, Growth in
20 µM ACC (top) and 2 µL
L 1 of 1-MCP and 20 µM
ACC (bottom). Note that 1-MCP reverses the effect of ACC but does not
restore epi/epi or double mutants to
normal.
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Ethylene-regulated gene expression was examined in the leaves of
light-grown plants held in air or treated with 20 µL
L 1 ethylene using probes for the basic
chitinase genes CHI9 (Danhash et al., 1993 ) and
E4 (Lincoln and Fischer, 1988 ; Fig.
3). Chitinase expression was elevated in
untreated epi/epi and double-mutant plants when
compared with normal cultivars and Nr, but was slightly higher in epi/epi. E4 transcripts remained at a
constant low level in all five genotypes. The abundance of both
transcripts increased in all ethylene-treated samples, regardless of
genotype.

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Figure 3.
Ethylene-inducible gene expression in
epi. Total RNA was isolated from leaves of greenhouse-grown
plants either from control leaves ( ethylene) or from plants that had
been treated with 20 µL L 1 ethylene for
8 h (+ ethylene). Genotypes are indicated as follows: a, AC
(nr/nr); b, Nr/Nr; c, VFN8 (Epi/Epi);
d, epi/epi; and e,
epi/epi;Nr/Nr. Twenty µg of RNA was
loaded per lane and the filter was hybridized to probes for
CHITINASE9 (CHI9), E4, and
ACTIN.
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Leaf Epidermal Cell Shape Is Altered in epi
Plant growth is determined by cell expansion, which in turn is
controlled by numerous environmental and genetic mechanisms (van
Volkenburgh, 1999 ). Ethylene has been shown to have both positive and
negative effects on cell growth and expansion, depending on the species
and process that is under investigation. In Arabidopsis, the
ethylene-insensitive mutants etr1 and ein2
both have larger leaves compared with wild-type controls (Bleecker et
al., 1988 ; Guzman and Ecker, 1990 ). In contrast, the ctr1
mutant, which displays a constitutive ethylene response, has smaller
leaves due to reduced cell expansion (Kieber et al., 1993 ). The cell
morphology of epidermal cells from the adaxial surface of
wild-type tomato cultivars AC and VFN8 along with those of
Nr/Nr, epi/epi, and the
epi/epi;Nr/Nr double mutant
were examined by scanning electron microscopy (Fig. 4). Epidermal cells of AC and VFN8
typically had a convoluted and irregular morphology. This appeared more
pronounced in Nr/Nr cells. However, in
epi/epi the convoluted phenotype was greatly reduced, with cells having a more rounded, swollen appearance. Addition
of the Nr mutant into the epi background in the
double mutant partially suppressed the swollen phenotype and the cells appeared slightly more convoluted but had not regained the appearance of the normal parents. Cells of the abaxial surface were also examined,
and a trend similar to that described above was observed (data not
shown). However, it should be noted that this surface is not amenable
to study in tomato. Whereas the adaxial surface is relatively planar,
the abaxial surface is highly convoluted due to the presence of
vascular tissue.

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Figure 4.
Morphology of adaxial epidermal cells. Genotypes
are indicated as follows: a, AC (nr/nr); b,
Nr/Nr; c, VFN8 (Epi/Epi); d, epi/epi,
and e, epi/epi Nr/Nr. Note swollen morphology of the
epi/epi mutant (d) compared with the isogenic
control VFN8 (c). Magnification is ×700; bar = 10 µm.
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Genetic Mapping of the epi Mutant
In order to assess the possibility of genetic linkage between the
epi locus and candidate genes, including two previously mapped tomato CTR1-like sequences (Giovannoni et al., 1999 ),
an F2 population of 31 individuals was generated
from a cross between the epi/epi mutant (L. esculentum) and the wild species Lycopersicon cheesemannii (accession no. LA483). Sixty RFLP markers spaced approximately 20 cM apart throughout the tomato genome were analyzed for linkage to the mutant phenotype. This analysis revealed linkage to
the marker CT50 that is located on the long arm of chromosome 4. Further analysis revealed the location of the mutant to lie within a
12-cM region on chromosome 4 between CT133 and TG163. The map position
was subsequently refined to a 5-cM interval between TG22 and CT239
using an F2 population of 139 individuals
generated from a cross between epi and the more divergent
wild species Lycopersicon pennellii (accession no. LA716;
Fig. 5). In our F2
populations and in the cross performed to generate the
epi/epi;Nr/Nr double mutant, we have found that the epi locus segregated as a
recessive trait. This observation is contradictory to the published
literature (Fujino et al., 1988 ), where the mutation is reported to be
dominant.

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Figure 5.
Placement of the epi locus on the
tomato RFLP map. An F2 population segregating for
epi and RFLP loci was generated from a cross between
L. esculentum (epi/epi) × L. pennellii (Epi/Epi). A total of 139 individuals were
scored on the basis of the epi phenotype, and linkage to
markers was determined as described in "Materials and Methods." The
tomato RFLP linkage map of Tanksley et al. (1992) is shown to
demonstrate conservation of marker order.
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DISCUSSION |
As previously reported, the epi mutant shows
characteristics of a constitutive ethylene response mutant. For
example, epi tissues produce abnormally high levels of
ethylene and have an epinastic growth habit (Fujino et al., 1988 ; Fig.
1), and the dark-grown seedling phenotype is similar to that of
wild-type seedlings treated with ethylene (Fujino et al., 1989 ; Fig.
2). Furthermore, these phenotypes are not reverted by inhibitors of ethylene synthesis or action (Fujino et al., 1989 ; Fig. 2).
We have examined the relationship between ethylene signaling and the
epi mutant with the aid of a double mutant constructed with
the ethylene-insensitive Nr mutant. Double-mutant, or
epistasis, analysis has been used extensively in studies of the
ethylene signal transduction pathway in order to resolve the order of
individual components within the pathway. For example, epistasis
analysis was used to position the Arabidopsis ctr1 mutant downstream of the ethylene receptor mutant etr1 (Kieber et al., 1993 ).
Using the Arabidopsis system as a model, we may expect that if
epi displays a whole-plant constitutive ethylene response,
then a double mutant constructed with Nr (which displays
dominant ethylene insensitivity) would have an identical phenotype to
that of epi. The results shown in Figure 1 indicate that
this is not the case. Whereas vegetative growth clearly resembles that
of epi in the double mutant (Figs. 1A and 2), petal
senescence and abscission and fruit ripening phenotypes are distinctly
Nr in origin (Fig. 1, B and C). These observations suggest
that epi may be constitutively activating a subset of
ethylene responses affecting vegetative development, whereas ethylene
responses controlling petal senescence and abscission and fruit
ripening are unaffected by epi. Phenotypes indicative of a
whole-plant constitutive response to ethylene have previously been
reported in tomato. For example, transgenic plants constitutively
expressing high levels of the ACC synthase gene, LEACS2,
produce elevated levels of ethylene, resulting in leaf epinasty and
rapid senescence and abscission of flowers (Lee et al., 1997 ).
Similarly, antisense inhibition of the ethylene receptor
LEETR4 results in a constitutive ethylene response phenotype that includes leaf epinasty, premature senescence and abscission of
flowers, and early fruit ripening (Tieman et al., 2000 ). However, the
phenotype of epi differs from that seen in these other
studies in that only a subset of ethylene responses affecting
vegetative growth appears to be modified.
The ethylene response of epi was monitored at the molecular
level by examining the expression of the ethylene-inducible genes CHI9 and E4 (Fig. 3). Chitinase gene expression
was elevated in the epi/epi and double-mutant
leaves in the absence of ethylene, suggesting a constitutive ethylene
response. However, E4 expression was at a low basal level in
all the genotypes examined, indicating that there is not global
constitutive ethylene-inducible gene expression in epi.
Ethylene treatment greatly increased the expression of both genes in
all genotypes. This suggests that CHI9 expression is not
saturated in untreated epi leaves and indicates that
epi retains ethylene responsiveness. The observation that
gene expression was also elevated in Nr and double-mutant
leaves in response to ethylene is likely due to Nr retaining
a residual ethylene response (Yen et al., 1995 ). This was observed in
dark-grown Nr and double-mutant seedlings treated with ACC
in which hypocotyls are shortened compared with untreated controls
(Fig. 2). As this is only a limited study involving two genes, the
possibility that elevated CHI9 expression in epi
is due to a stimulus other than ethylene cannot be ruled out.
Similarly, the possibility that CHI9 expression exhibits a
lower threshold of sensitivity to ethylene than E4 has not
been eliminated.
Data from our experiments suggest that epi does not possess
a whole-plant constitutive response to ethylene but may affect a subset
of ethylene responses related to vegetative growth and cell elongation.
A model describing this hypothesis is shown in Figure
6A. In this model, EPI lies directly
within the ethylene signaling pathway and acts downstream of the
ethylene receptors and CTR1 which, based on the Arabidopsis model, is a
global regulator of ethylene response. A mutation in EPI
disrupts normal growth and development and also results in elevated
ethylene synthesis, whereas other ethylene responses, including
senescence, ripening, and abscission, remain unaffected. However, an
alternative interpretation is that EPI is not an integral component of
the ethylene signaling pathway but functions in a separate pathway
required for normal cell expansion and vegetative growth that can
influence the ethylene signaling pathway (Fig. 6B). In this model, a
mutation in EPI causes abnormal cell growth and expansion,
leading to activation of the ethylene response pathway. Components of
this second hypothetical pathway are obviously unknown, but recent data
obtained from mutant screens and antisense experiments have revealed
that disruption of cell-wall-modifying enzymes in Arabidopsis yields
phenotypes similar to those of epi. For example, antisense
inhibition of the Arabidopsis expansin gene AtEXP10 resulted
in a curled leaf phenotype similar to that seen in epi (Cho
and Cosgrove, 2000 ). In addition, the Arabidopsis mutant
korrigan has the same dark-grown seedling phenotype as
epi, and the cotyledon epidermal cells have a similar
swollen shape to the epi epidermal cells (Fig. 4; Nicol et
al., 1998 ; Zuo et al., 2000 ). KORRIGAN has been shown to
encode an E-type endo-1,4- -glucanase (Nicol et al., 1998 ; Zuo et
al., 2000 ) highly similar to the tomato Cel3 gene (Brummell
et al., 1997 ). A search of the Institute for Genomic Research tomato
gene index (http://www.tigr.org/tdb/lgi/) revealed that the tomato Cel3 gene is identical to the RFLP marker CT70 that maps to
locations on chromosomes 1 and 5. Therefore, as epi maps to
the long arm of chromosome 4 (Fig. 5), it does not correspond to
cel3. Additionally, due to the similarity of epi
to the Arabidopsis ctr1 mutant, we have mapped two tomato
CTR homologs, tCTR1 and tCTR2, to
chromosomes 2 and 1, respectively (Giovannoni et al., 1999 ), indicating
that neither gene represents the mutation at the epi
locus.

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Figure 6.
Models proposing the action of the EPI
protein in tomato. A, EPI lies within the ethylene signal
transduction pathway to regulate a subset of ethylene responses that
lead to normal cell expansion. Mutation of EPI results in
abnormal cell expansion and leads to elevated ethylene synthesis (+ve).
B, EPI acts to control normal cell expansion and growth in a separate
pathway to the ethylene response pathway. Mutation of EPI
leads to abnormal cell expansion that in turn activates the ethylene
response pathway, causing elevated ethylene synthesis.
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We have investigated the constitutive ethylene response phenotype of
the tomato epi mutant. Our data suggest that the
epi mutant does not result in a whole-plant constitutive
activation of the ethylene response, but that it may affect a subset of
ethylene responses required for normal vegetative growth and
development. In addition, we have shown that epidermal cell shape is
highly altered in epi and we have mapped the mutation onto
the long arm of chromosome 4. A gene expression profile of
epi is currently being generated using micro-array
technology and efforts are under way to identify the EPI
gene via positional cloning. These experiments will help us to
determine the molecular nature of the link between cell growth and
expansion and the ethylene response.
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MATERIALS AND METHODS |
Plant Material and Treatments
Homozygous Nr/Nr seed and the
parental cultivar AC (nr/nr) were originally obtained
from the Glasshouse Crops Research Institute (Littlehampton,
UK). Seed for the homozygous
epi/epi mutation and parental cultivar
VFN8 (Epi/Epi) were obtained from the Tomato Genetics
Resource Center (University of California, Davis), as were the
wild tomato species Lycopersicon cheesmannii (accession no. LA483) and Lycopersicon pennellii (accession no.
LA716). Plants were grown under standard greenhouse conditions at Texas
A&M University (College Station) and Cornell University (Ithaca, NY).
Experiments on dark-grown seedlings were performed as follows.
Surface-sterilized seeds were sown on 1.5% (w/v) water agar in
the presence or absence of 20 µM ACC and 2 µL
L 1 1-MCP and incubated in the dark for 2 weeks. Ethylene
treatment of light-grown plants was performed by sealing plants in an
air-tight chamber and injecting ethylene to a final concentration of 20 µL L 1 for 8 h.
RNA Isolation and Gel Blot Analysis
Three grams of frozen leaf material was ground to a powder with
liquid nitrogen using a mortar and pestle. The powder was transferred
to a tube containing 10 mL of extraction buffer (4% [w/v]
p-aminosalicylic acid, 1% [w/v] 1, 5-napthalenedisulfonic acid, and disodium salt), to which 150 µL of
-mercaptoethanol had been added. Ten milliliters of water-saturated
phenol, and 10 mL of chloroform was added to the contents of the tube
and mixed. The phases were separated by centrifugation for 20 min at 10,000 rpm at 4°C. The aqueous phase was removed to a new tube and an equal volume of chloroform added. The contents were mixed well
and centrifuged as above. The aqueous phase was removed and placed in a
clean tube, and 2.5 mL of 10 M LiCl and 200 µL
of -mercaptoethanol was added. Precipitation was allowed to progress overnight on ice, and the RNA pellet was recovered by centrifugation for 20 min at 10,000 rpm. The pellet was resuspended in 1 mL of diethyl
pyrocarbonate-treated sterile water, divided into two 500-µL
aliquots, and 13 µL of 20% (w/v) SDS was added and mixed well. The
mixture was extracted once with chloroform:isoamyl alcohol (24:1). The
phases were clarified by centrifugation at high speed in a
microcentrifuge for 10 min. The aqueous phase was removed and placed in
a clean tube, and the RNA was precipitated by addition of 25 µL of 5 M NaCl and 2 volumes of ethanol. After storage at 20°C
for 1 h, the RNA was collected at high speed in a microcentrifuge for 30 min at 4°C. The pellet was washed in 60% (v/v) ethanol, air
dried, and resuspended in 100 µL of sterile diethyl
pyrocarbonate-treated water.
Twenty micrograms of total RNA was fractionated through 1% (w/v)
agarose gels containing 15% (v/v) formaldehyde. Gels were blotted onto
Hybond N nylon membrane (Amersham-Pharmacia Biotech, Uppsala) according
to the manufacturer's instructions. Filters were hybridized at 65°C
to [32P]-labeled random primed probes, synthesized as
described by Feinberg and Vogelstein (1983) , in a buffer containing 5×
SSC, 0.5% (w/v) SDS, 50 mM Na-P (pH 7.5), and 5×
Denhardt's solution. Hybridizations were performed for at least
16 h, after which the filters were washed in 2× SSC, 0.1% (w/v)
SDS and then 1× SSC, 0.1% (w/v) SDS at 65°C. Signal intensity was
visualized by autoradiography using XAR-S film (Kodak, Rochester, NY)
with two intensifying screens at 80°C.
Scanning Electron Microscopy
Leaf samples were fixed in an aqueous solution of 2.5% (v/v)
glutaraledehyde for 1 h and rinsed three times for 1 h each
in sterile water. After fixation, samples were dehydrated in a graded ethanol series, critical-point dried in carbon dioxide, coated with
gold, and examined under a scanning electron microscope (JEOL-JSM-6400, JEOL, Dallas).
DNA Analysis and Genetic Mapping
Genomic DNA was isolated from expanding tomato leaves and
analyzed by DNA gel-blot hybridization as described previously
(Tanksley et al., 1992 ). Two populations of F2 seed
segregating for epi and RFLP loci were generated from
crosses between Lycopersicon esculentum
(epi/epi) × L. cheesmannii
(Epi/Epi) and L. esculentum (epi/epi) × L. pennellii
(Epi/Epi). All RFLP markers used had been previously
localized onto the tomato map (Tanksley et al., 1992 ). Mapping in the
L. esculentum (epi/epi) × L.
pennellii (Epi/Epi) population was performed on
the basis of knowledge obtained from the L. esculentum
(epi/epi) × L. cheesmannii
(Epi/Epi) population. A total of 139 individuals from
the L. pennellii population were hybridized to the
markers TG443 and TG163 that flank the epi locus. Thirty-seven recombinant individuals were identified and these were
used as a subpopulation to identify linkage with nearby markers (Fig.
5).
AKNOWLEDGMENTS
We would like to thank Tom Stephens (Texas A&M University) for
his expert assistance with electron microscopy and Steve Tanksley (Cornell University) and Christiane Gebhardt (Max-Planck-Institut für Züchtungsforschung, Köln, Germany) for
providing RFLP markers.
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FOOTNOTES |
Received February 6, 2001; returned for revision April 6, 2001; accepted May 25, 2001.
1
This work was supported by the National Science
Foundation (grant nos. IBN-9604115 and DBI-9872617).
2
These authors contributed equally to the paper.
*
Corresponding author; e-mail jjg33{at}cornell.edu; fax
607-255-1132.
 |
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