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Plant Physiol. (1998) 117: 263-271
Isolation of the Ornithine-
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ABSTRACT |
|---|
|
|
|---|
To evaluate the relative importance
of ornithine (Orn) as a precursor in proline (Pro) synthesis, we
isolated and sequenced a cDNA encoding the
Orn-
-aminotransferase (
-OAT) from Arabidopsis thaliana. The deduced amino acid sequence showed high homology with bacterial, yeast, mammalian, and plant sequences, and the N-terminal residues exhibited several common features with a
mitochondrial transit peptide. Our results show that under both salt
stress and normal conditions,
-OAT activity and mRNA in young
plantlets are slightly higher than in older plants. This appears to be
related to the necessity to dispose of an easy recycling product,
glutamate. Analysis of the expression of the gene revealed a close
association with salt stress and Pro production. In young plantlets,
free Pro content,
1-pyrroline-5-carboxylate synthase
mRNA,
-OAT activity, and
-OAT mRNA were all increased by
salt-stress treatment. These results suggest that for A. thaliana, the Orn pathway, together with the glutamate pathway,
plays an important role in Pro accumulation during osmotic stress.
Conversely, in 4-week-old A. thaliana plants, although
free Pro level also increased under salt-stress conditions, the
-OAT
activity appeared to be unchanged and
-OAT mRNA was not detectable.
1-pyrroline-5-carboxylate synthase mRNA was still
induced at a similar level. Therefore, for the adult plants the free
Pro increase seemed to be due to the activity of the enzymes of the
glutamate pathway.
One of the most common responses in all organisms for regulating
internal osmolarity is the accumulation of compatible solutes such as
sugars and neutral amino acids. Under stress conditions free Pro
increase plays a key role for osmotic adjustment in a large number of
plant species (Rhodes et al., 1986 In plants formation of Pro from glutamate is similar to that
established first in bacteria (Fig. 1).
The glutamate is reduced into Pro by two enzymes, P5CS and P5CR. The
corresponding genes were isolated in plants by functional
complementation of bacterial mutants defective for the respective steps
(Delauney and Verma 1990
It is well known from labeling experiments that Orn can also serve as a
precursor to Pro in microorganisms, mammals, and higher plants (Csonka
and Baich, 1983 As seen before, the role of the glutamate pathway in the Pro
accumulation under stress conditions is well established. However, the
importance of the relative contribution of the Orn pathway in Pro
accumulation during stress is still a matter of discussion. As a matter
of fact, considering the response of Aiming to understand the role of We report the cloning and the sequencing of full-length Plant Growth and Salt-Stress Treatment
![]()
INTRODUCTION
Top
Abstract
Introduction
Methods
Results
Discussion
References
; Delauney and Verma, 1993
) and in
bacteria (Csonka, 1989
; Whatmore et al., 1990
). The potent
osmoprotective role of Pro was shown first in bacteria (Csonka, 1989
)
and later in higher plants (Sumaryati et al., 1992
; Kishor et al.,
1995
) by modified organisms simultaneously producing high levels of Pro
and displaying an enhanced osmotolerance. In higher plants, Pro
accumulation during osmotic stress appears to be essentially due to de
novo synthesis (Boggess et al., 1976
; Rhodes et al., 1986
; Verbruggen
et al., 1996
). Generally, in microorganisms (Cunin et al., 1986
; Davis
et al., 1986), mammals (Inana et al., 1986
), and plants (Kandpal and
Rao, 1982
; Delauney et al., 1993
), both glutamate and Orn are
recognized as possible precursors of Pro.
; Hu et al., 1992
). Regulation of the glutamate
route is relatively well documented: moth bean (Vigna
aconitifolia) P5CS enzyme synthesized in Escherichia
coli is allosterically inhibited by Pro (Hu et al.,
1992
). The stimulation of Pro biosynthesis under salt and water stress is also correlated with an increase in the levels of P5CR
and P5CS mRNA (Hu et al., 1992
; Verbruggen et al., 1993
; Savoure et
al., 1995
; Yoshiba et al., 1995
; Strizhof et al., 1997
).

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Figure 1.
Interrelation between Orn and glutamate pathways
in Pro biosynthesis. GSA, Glutamic-
-semialdehyde; KAV,
-ketoaminovalerate; P2C,
1-pyrroline-2-carboxylate; P2CR,
1-pyrroline-2-carboxylate reductase; PO/D, Pro
oxidase/dehydrogenase; P5CD, P5C dehydrogenase.
). For mammals and microorganisms, the conversion of Orn
to Pro via the loss of the
-amino group is catalyzed by
-OAT,
which produces P5C (Csonka and Baich, 1983
). In plants it was
established that transamination of Orn gives two possible
intermediates: P5C and
1-pyrroline-2-carboxylate, which can both be
reduced into Pro (Fig. 1; Mestichelli et al., 1979
). Only the route
involving the transamination of Orn into P5C was strongly indicated by
the functional complementation of a defective E. coli mutant
(Delauney et al., 1993
).
-OAT in osmotic stress
conditions, there is a discrepancy between the results indicating an
increase of enzymatic activity occurring in many plants (Kandpal and
Rao, 1982
; Hervieu et al., 1995
) and the decrease of mRNA level
observed in moth bean plantlets (Delauney et al., 1993
). Since these
studies were performed on different plant species, the discrepancy
could be due to variations in the
-OAT enzymatic activity from one
plant to another or within the same plant, according to the organ or
developmental stage.
-OAT in the Pro biosynthesis, our
approach was to study
-OAT in Arabidopsis thaliana, for which the enzymes of the glutamate pathway have already been cloned (Verbruggen et al., 1993
; Yoshiba et al., 1995
; Strizhof et al., 1997
)
and to determine how
-OAT expression varies as a function of plant
development after salt stress.
-OAT cDNA
from an A. thaliana library. The expression patterns of this
-OAT gene and the P5CS gene were compared at the RNA level in plants
subjected or not to salt stress.
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Methods
Results
Discussion
References
)
and grown in a culture room (24 ± 1°C, 16-h light/8-h dark
cycle). Young (12-d-old) or older (4-week-old) plants were transferred to liquid Feenstra medium 24 h before the induction of salt
stress. Salt-stress treatment consisted of replacing the Feenstra
solution with the same solution containing 200 mm NaCl for
6, 24, and 72 h.
Isolation of the
-OAT cDNA Clone Obtained from the EST Database
-OAT amino acid sequences from moth bean (Vigna
aconitifolia; Delauney et al., 1993Screening of the A. thaliana cDNA Library
DNA Probes
Template (25-50 ng) was labeled with [
32P]dCTP using a random-primed
DNA-labeling kit (Boehringer Mannheim).
Homologous Radioactive Probing
Using the EST clone 184H18T7 as a radioactive probe, we screened the A. thaliana (Colombia ecotype) cDNA library from a cell-suspension culture (Höfte et al., 1993
-OAT EST clone.
The primers ORN2 (5
-GAAGTACAAAGCGGTCTGGCTAGA-3
) and ORN3
(5
-CAGTTCCTC TCCAAGACTTGCTGA-3
) are localized in the sequence shown
in Figure 2. The positive tubes from the
first screening were subjected to subsequent radioactive and PCR
screenings until purification.
|
PCR Amplifications Used for Screening
PCR amplifications of the
-OAT fragment were
performed on resuspended bacterial colonies for the cDNA library. The total volume of the PCR reaction was 25 µL (5 µL of DNA template, 10 mm Tris-HCl, pH 8.3, 1.5 mm
MgCl2, 50 mm KCl, 0.1 mg/mL of gelatin, 0.2 mm each deoxyribonucleotide triphosphate, 0.5 µm each primer, and 0.5 unit of Taq DNA
polymerase [Boehringer Mannheim]). The optimized conditions for the
reactions were 5 min of denaturation at 94°C and 35 cycles at 94°C,
1 min of denaturation, 55°C, 1 min of annealing, 72°C, 1 min of
extension, and 10 min of extra extension at 72°C.
Sequencing of the DNA
Plasmids were extracted from a midi-scale culture via the alkaline lysis procedure (Maniatis et al., 1982Genomic DNA Extraction and Southern Hybridization
Genomic DNA was prepared from leaves of A. thaliana plantlets as described by Dellaporta et al. (1983)
-OAT cDNA isolated from the A. thaliana cDNA library was used as a radioactive
probe. Hybridization was carried out at 65°C in the following
solution: 10% SDS, pH 8.0, 0.37 g of EDTA, 67 g of
Na2HPO4·2H2O,
and 4 mL of H3PO4 (85%
orthophosphoric acid). The membranes were washed first in 2× SSC (0.3 m NaCl, 0.03 m
C6H5Na3O7·2H2O)
at room temperature for 40 min and then in 0.5× SSC at 42°C for 40 min before exposing them to radiographic film (DuPont).
Total RNA Extraction and Northern Hybridization
Total RNA was isolated from 12-d-old plantlets and 4-week-old plants incubated 0, 6, 24, and 72 h under normal and salt-stress conditions (200 mm NaCl) according to the method described by Rerie et al. (1991)
-OAT
cDNA isolated from the A. thaliana cDNA library was used as
the first radioactive probe. The hybridization and washing were
performed as described for the Southern analysis. The same experiment
was performed with the P5CS cDNA (Savoure et al., 1995Enzymatic Assays
One gram fresh weight from 12-d-old plantlets and 4-week-old plants was extracted with 4 mL of extraction buffer as described by Hervieu et al. (1995)
-OAT in function of
increasing substrate concentration was assayed following the measurement of the amount of P5C produced in 30 min using the ninhydrin
method (Kim et al., 1994
-OAT velocity was defined as
the micromoles of P5C produced per milligram of protein per hour.
Protein determination was done following the method of Bradford (1976)
).
Pro Content
After 0, 6, 24, or 72 h of salt-stress treatment, Pro was extracted from 0.3 g fresh weight of material from 12-d-old plantlets and 4-week-old plants and quantitated by the method of Bates (1973)| |
RESULTS |
|---|
|
|
|---|
Isolation, Sequencing, and Characterization of the A. thaliana
-OAT cDNA
-OAT cDNA. A total length
of 895 bp was obtained and included the 3
noncoding sequence with the
poly(A+) tail. About 70,000 bacterial clones from
the cDNA library were screened on 10 Petri dishes. Only one positive
band was detected and subjected to subsequent radioactive and PCR
screenings prior to purification. The full nucleotide and the deduced
amino acid sequences of the isolated A. thaliana cDNA clone
are shown in Figure 2. The cDNA insert has a size of 1675 bp and
contains a minimum open reading frame of 1428 nucleotides encoding a
putative preprotein of 476 amino acids, assuming the translation is
initiated at the first ATG codon (position 45) from the 5
part. The
polyadenylation signal AATAAA is present 15 bases upstream from the
start of the poly(A+) tail.
Southern Analysis of the Genomic DNA
Effect of Salt Stress on the Expression of the
Effect of the Salt Stress on the Expression of the
Pro Accumulation in Salt-Stressed Plants
We have isolated the cDNA encoding the full Received November 21, 1997;
accepted February 5, 1998.
Abbreviations:
We most gratefully thank T. Deprez for the gift of the A. thaliana cDNA library and the Laboratorium voor Genetica of Gent University for the gift of the A. thaliana P5CS cDNA. We
thank V. Frankard and M. Vauterin for their critical reading of this manuscript. We particularly thank V. Frankard for her excellent guidance in molecular biology. We thank V. Bouton for her technical assistance with the automatic sequencing. We thank F. Homble for his
explanations concerning the enzymatic assays. We thank C. Vermeidelen
and X. Vekemans for their guidance with the statistical analysis. We
thank M. De Ryck for the layout of the figures.
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Rao NA
(1982)
Water stress induced alterations in the properties of ornithine aminotransferase from Ragi (Eleusine coracana) leaves.
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Kim HR,
Rho HW,
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Maniatis T,
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Molecular Cloning, a Laboratory Manual.
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(1979)
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Van Montagu M,
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[Abstract]
-OAT amino
acid sequence with the available plant (Delauney et al., 1993
),
mammalian (Inana et al., 1986
), yeast (Degols, 1987
), and bacterial
(Bacillus subtilis; Gardan et al., 1995
) sequences revealed,
respectively, 65, 70, 71, and 72% similarity and 46, 52, 53, and 54%
identity (Fig. 3). As reported for the
moth bean
-OAT (Delauney et al., 1993
), the A. thaliana
-OAT sequence also shows regions that have considerable homology
with OAT enzymes that catalyze
-transamination (Fig. 3), such as the
region involved in the interaction with pyridoxal phosphate (Heimberg
et al., 1990
).

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Figure 3.
Comparison of the deduced
-OAT amino acid
sequence from Arabidopsis with plant (OATVA), mammalian (OATHS), yeast
(OATSC), and bacterial (OATBS) protein sequences. Shaded boxes indicate conserved amino acid residues. The domain corresponding to the putative
pyridoxal phosphate-binding site is underlined.
-Amino acids
involved in the interaction with pyridoxal phosphate are marked by a
star.
-OAT enzymes is about 60% over
most of the sequence. The greatest discrepancies are observed in the
N-terminal region. This is because human and moth bean
-OATs are
mitochondrial enzymes (Inana et al., 1986
; Delauney et al., 1993
);
therefore, the preprotein includes a transit peptide that is removed
upon entry into the mitochondrial matrix. In contrast, bacterial and
yeast
-OAT does not have a transit peptide (Degols, 1987
; Gardan et
al., 1995
). There is no consensus for the mitochondrial leader
sequence, but the N-terminal residues deduced from our isolated cDNA
exhibits several features in common with mitochondrial transit
peptides, such as the absence of acidic residues, the uniform
repartition, the relatively high content in positively charged
residues, and the high level of hydroxylated residues (Van Heijne et
al., 1989
; Canel et al., 1996
; Fig. 2). We propose that the
-OAT
precursor protein has a mitochondrial transit peptide.
-OAT in
Arabidopsis, the full
-OAT cDNA was used as a probe against the Arabidopsis genome DNA digested with various restriction enzymes (Fig.
4).

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Figure 4.
Southern blot of the
-OAT gene. A. thaliana genomic DNA was digested with different restriction
enzymes: Lane 1, BamHI; lane 2, KpnI; and
lane 3, SstI. Blot was hybridized with the full-length
-OAT cDNA.
-OAT sequence, in which no restriction
sites for BamHI and KpnI are present, and two
SstI restriction sites have been identified (data not
shown). These results suggest that only one
-OAT gene is present per
A. thaliana haploid genome.
-OAT A. thaliana Gene at the Enzyme Level
-OAT enzymatic activity
responds to salt stress in plant development, enzymatic assays were
performed on 12-d-old plantlets and 4-week-old plants incubated for 24 and 72 h in normal and salt-stress conditions (200 mm
NaCl; Fig. 5, A, B, and E). In the
control 12-d-old plantlets, the results obtained from the direct
linear plot (Fig. 5, C, D, F, and G) showed the maximum velocity to be
quite high (about 28 µmol P5C mg
1 protein
h
1). In the salt-stress treatment, the OAT
velocity had almost doubled compared with the control after 24 h
(42 µmol P5C mg
1 protein
h
1) and was strongly increased after 72 h
(82 µmol P5C mg
1 protein
h
1). In fact, the maximum velocity reached
values, respectively, 1.5 and 3 times higher for 24 and 72 h of
stress compared with those observed in normal conditions. These values
were significantly different, as determined using the median test
(Conover, 1980
).

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Figure 5.
A,
-OAT Orn saturation patterns of 12-d-old
plantlets (
) and 4-week-old plants (
). B and E, Orn saturation
patterns of 12-d-old plantlets in normal conditions (
; control) and
salt-stress conditions (200 mm NaCl;
) after
incubation for 24 h (B) and 72 h (E). The direct linear plot
of 1/V against S/V (see text for
explanation) was used to estimate the parameters of
Km and Vmax.
Km and Vmax were
calculated for 12-d-old plantlets after incubation for 24 and 72 h
under normal conditions (C and F, respectively) and under salt-stress
conditions (D and G, respectively).
1 protein
h
1) than in 12-d-old plantlets (Fig. 5A). The
salt stress did not seem to induce any effect in adult plants. The
maximum velocity remained very low (data not shown) and the apparent
Km value was not measurable with enough
precision under these conditions.
-OAT A. thaliana Gene at the RNA Level
-OAT mRNA and compare these levels with
those of the P5CS mRNA, northern analysis was performed in A. thaliana on 12-d-old plantlets and 4-week-old plants using similar
salt-stress conditions (Fig. 6). Probing
the blot with a labeled, full-length
-OAT cDNA showed a 1.6-kb
-OAT transcript in all samples from the 12-d-old plantlets, whereas
no clear response was detectable in the 4-week-old plants under
salt-stress or normal conditions. In contrast, P5CS mRNA was observed
in samples of both 12-d-old and 4-week-old plants. Moreover, after
24 h of salt stress, a significant increase in
-OAT mRNA was
observed. An extra 72 h of exposure to salt stress increased the
-OAT mRNA level. In comparison, rapid accumulation of P5CS mRNA was
observed 6 h after salt stress. After this maximum, the P5CS mRNA
was still induced but at reduced transcript levels for both the
4-week-old and the 12-d-old plants.

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Figure 6.
Total RNA isolated from 12-d-old plantlets and
4-week-old plants incubated for 0, 6, 24, and 72 h in 200 mm NaCl. Blots were hybridized with the full-length
-OAT
cDNA (A) or with the full-length P5CS cDNA (B). The membranes were
stained with methylene blue to verify the equal amount, loading, and
transfer of RNA (C and D).
-OAT under normal and
salt-stress conditions with a possible consequence on Pro accumulation, analysis of the Pro content was performed on 12-d-old and 4-week-old plants (Fig. 7). This experiment shows,
first, that accumulation of Pro was induced 6 h after salt-stress
incubation for plant and plantlets. Second, when 12-d-old seedlings
were subjected to 24 and 72 h of incubation in 200 mm
NaCl, the level of free Pro reached, respectively, 3.5 and 4 µmol
g
1 fresh weight, which is about 20-fold higher
than in the control plantlets. In the 4-week-old plants, the free Pro
level, as in young plantlets, was about 0.2 µmol Pro
g
1 fresh weight in normal stress conditions,
but the increase after salt-stress treatment (approximately 7-fold) was
less than in young plants.

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Figure 7.
Pro concentration in plant tissue after 0, 6, 24, and 72 h of 200 mm NaCl-stress treatment in 12-d-old
plantlets (black bars) and 4-week-old plants (shaded bars). FM, Fresh
mass.
![]()
DISCUSSION
Top
Abstract
Introduction
Methods
Results
Discussion
References
-OAT preprotein
from A. thaliana. The similarity of the predicted
-OAT
protein with the amino acid sequences from bacteria, yeast, and mammals was high (about 70%). However, the similarity with the only plant sequence available, moth bean, was only 65%. This did not seem to be
associated with the existence of different isoforms of OAT. In fact, it
is well known that two forms exist,
-OAT and
-OAT (Heimberg et al., 1990
; Schultz and Coruzzi, 1995
).
-OAT or
-OAT (Mestichelli et al., 1979
). However, until now only
forms of OAT have been cloned in plants (Delauney et al., 1993
), mammals (Inana et al., 1986
), yeast (Degols, 1987
), and bacteria (Gardan et al., 1995
). As demonstrated for moth
bean, the A. thaliana OAT is a
-OAT. The possibility that this clone would be an
form has to be discarded because the sequence of the region involved in the interaction with the pyridoxal phosphate has no significant homology with the
-aminotransferase (Schultz and Coruzzi, 1995
) but is very similar to that of all
-aminotransferases (Heimberg et al., 1990
). As for moth bean, the
deduced amino acid 5
sequence of A. thaliana
-OAT seems to indicate the presence of a mitochondrial transit peptide. Therefore, the cloned A. thaliana
-OAT cDNA does not seem to encode
an isoenzyme localized in a distinct subcellular compartment. This is
in agreement with the subcellular localization of the plant
-OAT by
measurement of its activity in isolated mitochondria (Taylor and
Stewart, 1981
; Polacco and Holland, 1993
) and with the fact that
arginase, the other enzyme of Arg catabolism, is also localized in this organelle (Taylor and Stewart, 1981
).
-OAT enzyme has been shown to participate in Pro biosynthesis,
but its contribution relative to that of the glutamate pathway is still
a matter of discussion (Kandpal and Rao, 1982
; Delauney et al., 1993
;
Hervieu et al., 1995
). This is probably because studies have been
performed in different plant species and under different physiological
conditions, in which the two pathways could play different roles.
-OAT activity and transcripts vary as
a function of the age of the plant: for young seedlings (12 d after
germination), the
-OAT activity reaches values 10 times higher than
those observed in 4-week-old plants.
-OAT transcripts are detectable
in only the young seedlings, whereas the Pro content does not appear to
vary significantly in young tissues compared with older plants. This is
in agreement with the fact that Arg is very important in seedling
nitrogen nutrition.
). The products of this
hydrolysis are urea and Orn. Urea appears to have a function in
recycling nitrogen into ammonium via urease (Zonia et al., 1995
). The
massively de novo synthesized Orn is transformed into glutamate
semialdehyde via the
-OAT enzyme, but this does not appear to
influence the Pro levels (Polacco and Holland, 1993
). In fact,
glutamate semialdehyde seems to be oxidized into glutamate via P5C
dehydrogenase which can then be used for transamination or to generate
new carbon constituents upon entry into the Krebs cycle as a
ketoglutarate (Polacco and Holland, 1993
). This can explain why in our
experiment, under normal conditions, the
-OAT activity was high in
the plantlets but was not related to a significant increase in Pro
content.
; Boggess et al., 1976
). The
-OAT activity in Ragi
(Eleusine coracana) leaves also increases under water stress
(Kandpal and Rao, 1982
). The Orn pathway contributes via an increase of
-OAT activity to Pro biosynthesis as well as the glutamate pathway
in salt-treated radish cotyledons (Hervieu et al., 1995
). However, this
key role is not confirmed at the transcriptional level in moth bean
plantlets in which
-OAT mRNA levels were markedly depressed by salt
stress. The authors suggested that during salt stress Pro is
synthesized predominantly via the glutamate pathway (Delauney et al.,
1993
).
-OAT activity is
markedly increased by salt-stress treatment. Moreover, the free Pro
level, the
-OAT mRNA, and the P5CS mRNA are all increased by salt
stress. However, after salt-stress treatment,
-OAT and P5CS mRNA
accumulated with different patterns. The
-OAT mRNA increased
slightly after 24 h and more markedly after 72 h, whereas the
P5CS mRNA levels rapidly accumulated to a maximal value 6 h after
induction and decreased until 24 h of exposure. In 4-week-old
A. thaliana plants, although the free Pro level also
increased under salt-stress conditions, the
-OAT activity appeared
to be unchanged and
-OAT mRNA was not detectable. In contrast, P5CS
mRNA was still induced to similar levels. Thus, for adult plants the
free Pro increase seems to be due to only the activity of the enzymes
of the glutamate pathway.
-OAT sense and
antisense cDNA in transgenic plants. This should allow evaluation of
the importance of the Orn pathway in Pro formation and the validity of
such approach for obtaining crops with better osmotolerance.
1
N.H.C.J.R. was the recipient of a fellowship
from the Fond National de la Recherche Scientifique Belge. This work
was also supported by the Belgium Program of Concerted Actions (no.
92).
![]()
FOOTNOTES
*
Corresponding author; e-mail nroosens{at}vub.ac.be; fax
32-2-359-039.
![]()
ABBREVIATIONS
-OAT, Orn-
-aminotransferase.
EST, expressed sequence tag.
P5C,
1-pyrroline-5-carboxylate.
P5CR,
1-pyrroline-5-carboxylate reductase.
P5CS,
1-pyrroline-5-carboxylate synthase.
![]()
ACKNOWLEDGMENTS
![]()
LITERATURE CITED
Top
Abstract
Introduction
Methods
Results
Discussion
References
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Proc Natl Acad Sci USA
89:
9354-9358
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[Abstract]
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[CrossRef][ISI][Medline]
Copyright Clearance Center: 0032-0889/98/117/0263/09
© 1998 American Society of Plant Physiologists
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